Actinoplanes sp. SE50: ACWT_6751
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Entry
ACWT_6751 CDS
T05392
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acts
Actinoplanes sp. SE50
Pathway
acts03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACWT_6751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acts03400
]
ACWT_6751
Enzymes [BR:
acts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACWT_6751
DNA repair and recombination proteins [BR:
acts03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACWT_6751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ATO86166
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All DBs
Position
7579416..7580384
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AA seq
322 aa
AA seq
DB search
MMAGMAEERDGVPLTNLDQEIFPAAGATKRDLIDYLDAMSARLLPVLRDRPLSVIRVLRG
QDRFMQKNLPKYTPDWVPRTTVWAEASHREVTYALGNDRRTLLWLGNQRAVELHPALALA
SAPHRQTHLIMDLDPPEDDGFPAAVAAARLVRQALAEAGLSGAVKTSGSKGVHVFVPLAG
DPAPEDVAAAQRAVAARAERIDPVLATTAFIREDRHGRVFLDATRAGGATVAAAYSPRIR
PGVPVSFPVAWDELDGVTPADFTIHTAPALLRDDDPWAAAMPAPQPLDAGLIAEGHTIPV
ARVQAMHEGKRRAKARRESATD
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgggcatggctgaggagcgcgacggagtcccgctgaccaatctggatcaggag
atcttcccggcggcgggcgccaccaagcgggatctgatcgactatctggacgcgatgtcc
gcccggctgctgccggtgctgcgggaccggccgctgtcggtgatccgggtgctccgcggg
caggaccggttcatgcagaagaacctgccgaaatacacgccggactgggtgccgcggacc
acggtctgggcggaggcctcgcatcgcgaggtcacctacgcgctcggcaacgaccggcgc
accctgctgtggctcggcaaccagcgggccgtcgagctgcacccggcgctggcgctggcc
tccgccccgcaccggcagacccacctgatcatggatctggacccgccggaggacgacggc
ttcccggccgcggtggcggcggcgcggctggtccggcaggccctggccgaggccgggctg
agcggtgcggtgaagaccagcggctccaagggggtgcacgtcttcgtcccactggccggc
gacccggcacccgaggacgtcgccgcggcgcagcgggccgtggcggcccgcgccgagcgg
atcgacccggtgctggccaccaccgcgttcatccgcgaggaccggcacggccgggtgttc
ctggacgcgacccgggccggcggggcgaccgtggcggccgcctacagcccgcggatccgg
ccgggggtgccggtgtcgttcccggtcgcctgggacgagctggacggtgtgaccccggcc
gacttcaccatccacaccgcgccggcgctgctgcgggacgacgatccgtgggcggccgcg
atgccggcgccgcaaccgctggacgccgggctgatcgccgaggggcacaccatcccggtg
gcccgggtgcaggccatgcacgagggtaaacgccgggccaaggcgcgccgcgagagcgcg
acggactga
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