Acropora digitifera (stony coral): 107338007
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Entry
107338007 CDS
T04352
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03040
Spliceosome
adf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107338007
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107338007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
adf03041
]
107338007
04121 Ubiquitin system [BR:
adf04121
]
107338007
03400 DNA repair and recombination proteins [BR:
adf03400
]
107338007
Enzymes [BR:
adf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107338007
Spliceosome [BR:
adf03041
]
Complex B
Other components
Prp19 complex
107338007
Complex C
Prp19-CDC5 complex
107338007
Ubiquitin system [BR:
adf04121
]
Ubiquitin ligases (E3)
U-box type E3
107338007
DNA repair and recombination proteins [BR:
adf03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
107338007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_EIPR1
U-box
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
NBCH_WD40
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_ACSF4
Beta-prop_Nup120_160
Beta-prop_DCAF12
B-prop_COPA_B_2nd
zf-Nse
ATG16
HpcH_HpaI
PAS_11
Motif
Other DBs
NCBI-GeneID:
107338007
NCBI-ProteinID:
XP_015758740
LinkDB
All DBs
Position
Un
AA seq
518 aa
AA seq
DB search
MTLCSCTCFQGNKMALFCSISNEVPEHPCVSPSSNCVFERHLIEKYIAENGTDPISGEPV
SEDQLIDIKVNPLVKPRPPSATSIPAILKALQDEWDACMLHSFTLRQQLQTARQELSHAL
YQHDAACRVIARLTKEVTAAREALATLKPQAGMAVVPTPTIPAQVEEAMEVSGQPGEEEG
MTEEVLQKLQDKATLLTAERKKRGKKVPEDLSTVDEIRSYKPISSHAGLHSASNPGILAV
DLFDGDTSRVITGGLDKNAVVFYRDTEQVIATLKGHTKKVTNVVYHPHEDLGFSASADAT
IRVWSIPQASCSHVVKAHDQAVTGLSLHATGDYLLSCSVDQHWAFSDLRTGHVLTRCLSD
PNINQGLTCAQFHPDGLIFGTGTTDSVIKIWDLKEGANVAKFPGHSGPITDISFSENGYY
LATSADDSVVKLWDLRKLKNFKTITLEDRFEVKTLSFDQSGTYLAVGGSEIQIYLVKQWE
LIKSFAEHSGITTGVKFGKHASFIASVGLDRHLKFYSR
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttgctcttgcacatgctttcaaggaaacaaaatggcgctgttctgttcaatc
agtaacgaagtccctgagcacccttgtgtctcaccatcctctaactgcgtgtttgaaagg
cacctgatagaaaagtatattgctgagaacggcactgatccaatcagtggagagcctgta
tcagaggatcagttgattgacattaaagtgaaccctctagtgaaaccaagacctccctca
gccaccagtattccagcaatattgaaagctcttcaagatgaatgggatgcctgcatgctg
catagttttactctgcgtcagcagcttcaaacagcgagacaagaattatcacatgcactg
tatcaacatgatgcggcttgtcgtgttattgctcgtttaacaaaggaagtgactgctgcc
cgtgaagctctggctactctcaaacctcaagctggtatggctgttgttcctacaccaact
attccggcacaggtggaagaagccatggaagttagtggtcagcctggtgaggaagaggga
atgactgaagaagtactacagaagttgcaagacaaggccacacttctcactgcagaacga
aagaagagaggcaagaaagttccagaagatctcagtaccgtggatgaaatacgttcttac
aagcctatctcatcgcatgcaggactccacagtgcaagtaatccaggaatattggcagtg
gatttgtttgatggagacacatccagagtaatcacaggtggtcttgacaagaatgctgtt
gtgttttatcgggatactgaacaagttattgctactctgaagggtcacaccaagaaggtt
acaaacgttgtctatcatccacatgaggatcttggattctcagcgtcagcagatgctacc
attcgtgtatggtctattcctcaagcgagctgctctcatgttgttaaggctcatgatcaa
gctgtcactggccttagtcttcatgcaactggtgattatcttctaagctgctctgtggat
caacattgggcattctctgacctcagaacaggtcatgtgctgaccagatgtttgtctgat
ccaaacattaatcaagggttgacttgtgcccagtttcatcctgatggtcttatatttggt
accggaacaacagacagtgtgattaagatctgggatctgaaggaaggggctaatgtggct
aagtttcctggacactctggtcctattacagatatctcgttctcagaaaatggttactac
ttggcaacttcagctgatgactcagtggtaaaactgtgggatttacgcaaactgaagaac
tttaaaaccattacactagaggatagatttgaggtgaaaacccttagttttgatcaaagt
ggcacatatctggctgttggtgggtctgaaatccaaatttatctcgtcaaacaatgggaa
ctgatcaagtcatttgcagaacactcaggcatcactacaggagtaaagtttggaaagcat
gcttcctttattgcctcagttggccttgaccgtcatcttaagttctactcgcggtag
DBGET
integrated database retrieval system
