Aeromonas dhakensis: CK627_02385
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Entry
CK627_02385 CDS
T05186
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
adh
Aeromonas dhakensis
Pathway
adh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
adh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CK627_02385 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adh03021
]
CK627_02385 (rpoB)
03400 DNA repair and recombination proteins [BR:
adh03400
]
CK627_02385 (rpoB)
Enzymes [BR:
adh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CK627_02385 (rpoB)
Transcription machinery [BR:
adh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CK627_02385 (rpoB)
DNA repair and recombination proteins [BR:
adh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CK627_02385 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
ASX09706
LinkDB
All DBs
Position
complement(454199..458227)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEADPEGEYGLEAAFRSVFPIT
SYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEQILATFFETIGFEVKDGKLMMD
LVPERLRGETATFDIVANGAVVVETGRRVTARHIRQLEKDSVTQIEVPVEYVVGKVAAKD
YAHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETLRIDSSSSRL
EALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLAREDETGVGTL
TKDDIVDVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPYRKVIDGVIT
DEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQYMDVSPQQI
VSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVDSGVTVVAKR
GGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCVMLGEPVMAG
DVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTIHIQELACIS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEMQLKEAKKDL
TEEFKILEDGIFGRSRNLLLAAGYSEDRLNKLDRSKWFELAIEDEAKQIELEQIAEQHVE
LKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIC
PVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGEKIDRMVKEQRELHE
MRDFLQQVYDLGEKDTQQVNVAELSDDDVRTLVGNLRKGLPVATPVFDGAKEREIKALLK
LADLPESGQIALFDGRTGNAFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgaaaaaaaacgcattcgtaaggacttcggtaagcgagaccag
gtactggacacgccttatctgttgtccattcagctggactccttcaagcagttcatcgag
gctgacccggaaggtgaatatggcctagaggccgctttccgtagcgttttcccgatcacc
agttactccggtagtgctgagcttcagtatgtcagctatcgcctgggtgagccggtattt
gacgtaaaagaatgccagatccgtggagtgacctactccgcgccgctgcgtgtcaagctt
cgtatggttctgtacgaccgtgaagcagctgccggcaccgtcaaagacatcaaggaacaa
gaagtatacatgggcgaaattccgctcatgaccgagaacggcacctttgtcatcaatggt
accgagcgggtaatcgtctcccagctgcaccgcagcccgggcgtcttcttcgaccacgat
aaaggcaaaacacattcatccggtaaggtgctgtataacgctcgcgttattccctaccgt
ggctcctggctggacttcgagttcgatgcgaaagacaacttgtttgtccgtatcgaccgt
cgtcgcaaactgccggcatccattattctgcgtgccctggatttcagttccgaacagatt
ctggccaccttcttcgagaccatcggtttcgaagtcaaagatggcaagctgatgatggat
ctggtgccggagcgcctgcgtggtgaaactgcgacctttgacatcgtggccaatggcgcc
gtggtggttgagaccggtcgtcgagtgactgcgcgtcacatccgtcagttggaaaaagat
tccgttacccagattgaggtaccggttgagtatgttgttggcaaagttgctgctaaggac
tacgcacatccgcaaactggcgagatggtagtgactgccaaccaggcgctgagcctggaa
gcggtagccaacctctcccaagccggcttcaagcatttcgaggttctgttcaccaacgaa
ctggaccacggtgcctacatgtccgagaccctgcgtatcgactccagctccagccgcttg
gaagccctggtcgagatctatcgcatgatgcgtccgggtgagccgccgactcgcgaagcc
gcagagcagctgttcgagaacctgttcttctcttccgaacgttacgacctgtctaccgta
ggtcggatgaagttcaaccgccgtctggctcgtgaagacgagaccggcgtgggcaccctg
accaaagacgatatcgtcgatgtgatgaagcgcctgatcgacatccgtaacggtaacgac
gaagtggacgatatcgaccacctgggcaaccgtcgtatccgttctgtcggtgaaatggcc
gagaaccagttccgtgtcggtctggtgcgtgtcgagcgtgcggtcaaggagcgtctctcc
ctgggcgacctggacaccctgatgccgcaggatctgatcaacgccaagccgatctccgcc
gcagtcaaagagttctttggttccagccagctgtcccagttcatggaccagaacaacccg
ctgtccgaagtaacccacaagcgccgtatctccgcgctgggcccgggcggtttgactcgt
gagcgtgccggctttgaagttcgagacgtacacccgacccactacggtcgtctgtgcccc
atcgagactcctgaaggtccgaacatcggtctgatcaactccttgtccgtgtactctcgt
accaacgagtacggtttcctcgagaccccgtaccgcaaggtcattgacggtgtgatcacc
gacgaagtggactatctgtctgctattgaagaaggcaagtacgtgatcgcacaggctaac
gccgcgaccaccgaagatggccgtctgaaagatgaattgatcccgtgccgtcacaaaggt
gaatccacctttatgaacgccgaccagatccagtatatggacgtgagcccgcaacagatc
gtctctgtggcagcggccctgatccccttcctggaacacgatgacgcgaaccgcgcattg
atgggctcaaacatgcaacgtcaggctgtaccgactctgcgcgccgacaagccgctggtt
ggtaccggtatggaacgcgctgtggccgttgactccggtgttaccgtagtggccaagcgt
ggcggcatgatcgactacgtcgatgcttcccgtatcgttatcaaggtcaacgaagatgag
ctgctgcctggcgaagccggcatcgacatctacagcctgaccaaatacacccgttccaac
cagaacacctgtatcaaccagcgtccgtgcgtgatgttgggcgagccggtaatggcgggc
gacgtactggctgacggcccgtccaccgacttgggtgaactggcgctgggtcagaacctg
cgcgtcgcgttcatgccgtggaacggttacaacttcgaagactcgatcctggtgaacgag
cgtgttgttcaggaagatcgcctgaccaccattcacatccaggaactggcctgtatctcc
cgtgacaccaaactgggtccggaggagatcactgccgacatcccgaacgtgggtgaagcc
gctctgtccaagctggacgaatccggtatcgtctacgtgggtgccgaagtgaagggcggc
gacattctggtaggtaaggtgaccccgaaaggtgaaacccagctgaccccggaagagaag
ctgctgcgcgccatcttcggtgagaaggcgtccgacgtgaaggactcttccctgcgtgtg
ccgaacggtgtgtacggtaccgtggttgacgtgcaggtctttacccgcgatggcgtggaa
aaagacaagcgcgccaaagaaatcgaagagatgcagctgaaggaagcgaagaaggacttg
accgaagagttcaagatcctggaagacggcattttcggccgctcccgcaacctgctgctg
gccgccggttacagcgaagaccgtctgaacaagctcgatcgctccaagtggtttgaactg
gccatcgaagatgaagccaagcaaatcgagctggaacagatcgctgaacagcacgttgag
ctgaaggccgagttcgacaagaaattcgagaacaagcgtcgcaagatcatccagggcgat
gacctggcgccgggcgtcctgaagatcgtcaaggtctatctggccgtcaagcgtcgcatc
cagccaggtgacaagatggcgggtcgtcacggtaacaagggtgttatctccaagatctgt
ccggtcgaggatatgccccatgacgagtacggccgtccggtcgacatcgttctgaacccg
ttgggcgtaccgtcccgtatgaacatcggtcagatccttgaagtgcacctgggcctcgcg
gccaagggtattggcgagaagatcgaccgcatggtcaaggaacagcgcgagctgcacgag
atgcgtgacttcctgcaacaggtctatgacctgggcgagaaagacacccagcaagtgaac
gtggccgagctgtccgacgacgacgtacgtaccctggtcggtaacctgcgcaagggtctg
ccggtggcaactccggtatttgatggcgccaaagagcgtgaaatcaaggccctgctgaag
ctggccgacctgccggaatccggtcagatcgccctgttcgacggtcgtaccggtaacgcc
ttcgagcgtaaggtcaccgtgggttacatgtacatgctgaagctgaaccacctggtagac
gacaagatgcacgcgcgttctaccggctcctacagcctggttacccagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgtttcggtgagatggaagtgtgggccctggaggct
tacggtgcggcatataccctgcaggagatgctgaccgtcaagtctgacgatgtgaatggc
cgtaccaagatgtacaagaacatcgtggatggcgaccaccgtatggagccgggcatgccc
gaatccttcaacgtattgctgaaggaaatccgctctctgggtatcaacatcgagctggac
gaagagtaa
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