Alicycliphilus denitrificans K601: Alide2_0409
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Entry
Alide2_0409 CDS
T01463
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
adk
Alicycliphilus denitrificans K601
Pathway
adk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
adk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Alide2_0409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adk03021
]
Alide2_0409
03400 DNA repair and recombination proteins [BR:
adk03400
]
Alide2_0409
Enzymes [BR:
adk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Alide2_0409
Transcription machinery [BR:
adk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Alide2_0409
DNA repair and recombination proteins [BR:
adk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Alide2_0409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AEB82833
UniProt:
F4GG49
LinkDB
All DBs
Position
425961..430085
Genome browser
AA seq
1374 aa
AA seq
DB search
MAQTSTYSYTERKRIRKSFGSRDSVLKVPYLLQMQRDAYTAFLQAETPPQKRTSEGLQAA
FNAAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTA
QSKVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK
LLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDN
FRLMDSGAQMEFVPERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTTHISVP
EDFLLGRVVARNIVDPDTGEILAKANEELTEALLKKLRSAGVQELQAIYTNELDQGAYIS
QTLRIDETADEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAK
VGRSEATGPMVLDNDDILSVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRTGL
ARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKR
RVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIE
TPYRRVVDGKVTSEIDYLSAIEEGKYIIAQANAALDEEGRLTGDLVSAREQGESTLVSAE
RVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVA
AVDSGTVVTARRGGVVDYVDATRIVVRVHDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQR
PIVKKGDVLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRY
TSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVT
PKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQI
IDDELKRFRLDLNDQLRIVEADAFDRIEKLLVGKKANGGPHKLAKGATIDKEYLAGVEKF
HWFDIRPADEAVAAQLESMKNAMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLA
VKRRLQPGDKMAGRHGNKGVVSKITPVEDMPHMADGTPVDIVLNPLGVPSRMNIGQVLEV
HLGWAGKGLGQRIGDMLRDQANVAEMRKFLGEVYNSRGRKEDLSQLSDDEVMSMAANLTG
GVPYASPVFDGASEAEIKDMLKLAYPDDIKERKGLTDTRTQAWLIDGRTGERFERPTTIG
YMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQ
EMLTVKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaacatccacgtacagctataccgaacgcaagcggattcgcaagagtttcggt
agccgtgacagcgtgctcaaagtaccttatctgctgcagatgcagcgggatgcctatacg
gcattcctgcaggcggaaacgcctccccagaaacgtaccagcgaaggcctgcaggccgcg
ttcaacgccgccttcccgatcgtctcgcacaacggcttcgtggagatgaagttcgtggag
tacaacctggcaaagcccgcgttcgacgtgcgcgagtgccagacccgcggtctgaccttc
gcctcggccgtgcgcgccaaggtgcagctcatcatctacgaccgcgagtcgtccacggcg
cagtccaaggtggtcaaggaagtgaaggagcaggaggtctacatgggcgaggttccgctc
atgaccgacaagggctcgttcatcatcaacggcaccgagcgcgtgatcgtctcgcagctg
caccgctcgccgggtgtgttcttcgagcatgacaagggcaagacgcacagctcgggcaag
ctgttgttctccgcgcgcatcatcccctaccgcggctcctggctggacttcgagttcgac
cccaaggacatcctgtacttccgcgtggaccgtcgccgcaagatgccggtcacgatcctg
ctcaaggccatcggcctgaacccggagtcgatcctcgcgaacttcttcgtcaacgacaac
ttccgcctgatggacagcggcgcgcagatggagttcgtgcccgagcgcctgcgcggcgag
gtggcgcgcttcgacatcaccgacaagtccggcaaggtggtggttgccaaggataagcgc
gtcacggcacgtcatacccgtgagctggaacaatcgggcacgacgcacatcagcgtgccg
gaagacttcctgttgggccgcgtcgtcgcgcgcaacatcgtcgatcccgacacgggcgag
atcctggccaaggccaacgaagagctgacggaagcgctgctcaagaagctgcgttcggca
ggcgtgcaggagctgcaggccatctacacgaacgagctcgaccagggcgcctacatttcc
cagacgctgcgcatcgacgagaccgcggacgagttcgccgcccgcgtggccatctaccgc
atgatgcgccccggcgagccgccgacggaagacgccgtgcaggccctgttccagcgcctg
ttctacaacccggacacctacgacctgtcgcgcgtgggccgcatgaagttcaacgccaag
gtcggccgcagcgaagccacgggccccatggtgctggacaatgacgacatcctgtcggtg
gtgaagatcctggtcgatctgcgcaacggcaagggcgaggtggacgacatcgaccacctg
ggcaatcgccgcgtgcgctgcgtgggcgaactggccgagaaccagtaccgcacgggcctg
gcgcgcatcgaaaaggccgtgaaggagcgcctgggccaggccgagcaggaaccgctgatg
ccgcacgacctgatcaactccaagccgatctccgcggccctgaaggagttcttcggcgcc
tcgcagctgtcgcagttcatggaccagaccaacccgctggccgagatcacgcacaagcgc
cgtgtctccgccctgggcccgggcggcctgacgcgcgagcgcgcgggcttcgaggtgcgc
gacgtgcacgtcacgcactatggccgtgtgtgcccgatcgagacgccggaaggcccgaac
atcggcctgatcaactcgctggccctgtacgcgcgcctgaacgagtacggcttcatcgag
acgccgtaccgccgcgtggtggacggcaaggtgacgagcgagatcgactacctgtcggcc
attgaagagggcaagtacatcatcgcccaggccaacgccgcgctggacgaggaagggcgc
cttacgggcgacctagtgtcggcgcgcgagcagggcgaatccaccctggtatccgccgaa
cgcgtgcagtacatggacgtgtcgcccgcgcagatcgtgtcggtggccgcatcgctcgtg
cccttcctggagcacgacgatgccaaccgcgcgctgatgggcgccaacatgtcgcgccag
gccgtgcccgtgctgcgtcccgagaagcccatggtgggcacgggcatcgagcgcgtggcg
gctgtggactcgggcaccgtggtgacggcgcgccgcggcggcgtggtggactatgtggat
gcgacccgcatcgtggtgcgcgtgcatgatgccgaggccgtggccggcgaagtgggcgtg
gacatctacaacctcatcaagtaccagcgctccaaccagaacacgaacatccaccagcgc
cccatcgtgaagaagggcgatgtgctggccaagggcgacgtgatcgccgacggcgcttcg
accgacctgggcgagatcgccatcggccagaacatgctgatcgcgttcatgccctggaac
ggctacaacttcgaggactcgatcctgatcagcgagcgcgtcgtggccgaagaccgctat
acctcgatccacatcgaggaactcgtggtgatggcgcgcgacaccaagctgggcgccgag
gaaatcacgcgcgacatcccgaacctgtcggagcagcagctcaaccgcctggacgagtcc
ggcatcatctacgtgggcgccgaagtgcagcccggcgacacgctggtcggcaaggtcacg
cccaagggcgagaccacgctcacgcctgaagagaagctgctgcgcgccatcttcggcgag
aaggcctcggacgtgaaggacacctcgctgcgcgtggaccagggctcgtccggcacggtg
atcgacgtgcaggtcttcacgcgcgaaggcatccagcgcgacaagcgcgcgcagcagatc
atcgacgacgagctcaagcgcttccgcctggacctgaacgaccagctgcgcatcgtcgag
gccgacgcgttcgaccgtatcgagaagctgctggtgggcaagaaggccaatggcggcccg
cacaagctcgccaagggcgcgaccatcgacaaggaataccttgccggcgtggagaagttc
cactggttcgacatccgccccgccgacgaggccgtggccgcgcagctcgaatccatgaag
aacgcgatggagcagacgcgccacagcttcgacctagcattcgaggaaaagcgcaagaag
cttacgcagggcgacgagctgcccgcgggcgtgctcaagatggtcaaggtgtacctggcc
gtcaagcgccgcctgcagcccggcgacaagatggccggccgccacggcaacaagggcgtg
gtctccaagatcacgcccgtggaagacatgccgcacatggccgacggcacgccggtcgac
atcgtcctgaacccgctgggcgtgccctcgcgcatgaacattggccaggtgctggaagtc
cacctgggctgggccggcaagggcctgggccagcgcatcggggacatgctgcgcgaccag
gctaacgttgccgagatgcgcaagttcctcggcgaggtctacaactcgcgtggccgcaag
gaagacctgagtcagctctcggacgacgaggtcatgagcatggccgccaacctcacgggc
ggcgtgccttacgcctcgccggtgttcgacggcgcttccgaggccgagatcaaggacatg
ctcaagcttgcctacccggacgacatcaaggagcgcaagggcctgaccgacacgcgcacc
caggcctggctcatcgacgggcgcacgggcgagcgcttcgagcgcccgacgaccatcggc
tacatgcactacctcaagctccatcacctggtggacgacaagatgcacgcgcgctccacg
ggcccgtactcgctggtcacgcagcagccgctgggcggcaaggcccagttcggcggccag
cgtttcggcgagatggaagtctgggcgctggaagcctacggcgccgcctacgtgctgcag
gaaatgctgaccgtgaagtccgacgacgtgcagggccgcaccaaggtgtacgagaacatc
gtcaagggcgaacacgccatcgaagcgggcatgcccgagtcgttcaatgtgctggtcaag
gaaatccgctccctgggcctggacattgagctcgagcgctcttaa
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