Aeromonas sp. 2692-1: E5E97_16445
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Entry
E5E97_16445 CDS
T08798
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aej
Aeromonas sp. 2692-1
Pathway
aej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5E97_16445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aej03019
]
E5E97_16445
03009 Ribosome biogenesis [BR:
aej03009
]
E5E97_16445
Enzymes [BR:
aej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E5E97_16445
Messenger RNA biogenesis [BR:
aej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E5E97_16445
Ribosome biogenesis [BR:
aej03009
]
Prokaryotic type
rRNA processing factors
E5E97_16445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QJT14361
LinkDB
All DBs
Position
3437955..3441086
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQSRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KAHIELVRPDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAPAAPAP
VVAPAAPAAPEAGLFGKLFKAISGLFGSDTAPADVKAPADKPAAQREARKDEGHRHQRDE
TRSRGQRGRRDDNRGNRSPADTAEKREAGANREGGESRNRRPRKEREPRQEREARGEVRE
QRMEREPREAREPRQERAPRAPRPAREPRAPREPRAEVVVDAVETVDAIMVNDEPRLEKE
QKVAERRERRQLRKQIRVDAPASDVAALPADAPVVAEEASDAVEQHDEQAEGQRRSRRTP
RNQRIEGQRRKRINEDARSQREDEEQSAEGTTPTLTAAAQADAAQVKVEEPAVPVITIPS
AEAVAAALQASAALTEHVVPEAVVAEAHEQAEVVAAEPVVTEAVVAEEAQVAVVNEPVVA
EVAAPVIAEAVAVEAPAIETAVVEAAPAAPAVEEAAPAVVVAEVAPLVVEQPAPVAEPVI
ADEAPVAAAVAAPVTKQVKRGGGLLAGARKASAPMATPAAAPALPVREPVDHAPLVRSEV
ASSGRHGGSTAAVNVATSPAGRP
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaagagttgcgcgtagcgctggttgac
ggacaacagctctacgatctggatattgaaagtccgggacacgagcagaaaaaagcgaac
atttacaagggcaaaatcacccgcgtagaacccagtcttgaagctgcttttgtcgactat
ggcgccgagcgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtg
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcagccctcaccacctttatc
agtctggccggcagctacctggtactgatgccgaacaatcctcgcgccggtggtatctcc
cgccgtatcgaaggtgatgaacggactgaactgaaagaagccctgagcggcctgaccgtg
ccggacggcatgggcctcatcgtgcgtaccgccggtgtgggtaaatctccggaagagctg
gaatgggatctgaacgttctgctcaaccactgggattccatccacaaggcgtcacagagc
cgctccgcgccggtgctgatccatcaggaaagcaacgtcattgtgcgtgccatccgtgac
tacctgcgtcgcgatgtcggcgagatcctgatcgacaacccggtcatcttcgagcgtgcc
aaggcgcatatcgagctggttcgtcccgatttcctcaatcgcgtgaagctgtacaagggt
gaagttgccctgttcaaccacttccagatcgagagccagatcgagtcggccttccagcgt
gaagtgcgtctgccctccggcggcagcatcgtcatcgatccgaccgaagcactgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagacggcgctgcaa
accaacctggaagcggccgacgaaattgcccgtcaattgcgcctgcgcgacctgggtggc
ctgatcgtcatcgacttcatcgacatgaccccggttcgtcatcagcgcgaagtggaaaac
cgtctgcgtgaagcggtgcatcaggatcgtgcccgcatccagctgggccggatctcccgt
ttcggtctgctggagatgtctcgccagcgtctgcgtccctccctcaacgagtccagcagc
catatctgccctcgttgccagggtcagggggtgatccgtgacaacgaatcactggcgctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcacggt
caggtgccggtggatgttgccgcctatctgctcaacgagaagcgtgcctccatcgccagc
ctggaacagcgcaatgatgtgcgtgtctacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcatccgtcagaacgagatcccggaagcggccagctacgagctg
aaaaccgagattgccaagccggtctaccagccgaagcaggctcaggtgatcgagcgcgaa
caaccgctgttgcaaggttttgtccaggcgccccagccggcccccgccgcgccggccccg
gtcgtggctcccgcagcaccggccgcgcccgaagccggtctgtttggcaaactgttcaag
gccatctccggcttgttcggttccgacaccgcccctgccgacgtgaaggctcctgccgac
aaaccggcagcccagcgcgaagcacgcaaggatgagggtcatcgtcatcaacgtgatgaa
acccgcagccgtggtcagcgtggtcgtcgtgatgacaaccgtggtaaccgcagccctgcc
gataccgcagagaagcgggaagcgggtgccaaccgtgaaggtggtgaaagccgcaaccgt
cgtccccgcaaagagcgtgagccgcgccaggagcgtgaagcccgtggcgaagtgcgtgaa
cagcgcatggaacgtgaacctcgcgaggctcgtgagccgcgtcaggaacgcgcaccccgc
gcaccgcgcccggctcgtgaaccccgtgctccgcgtgaacctcgcgccgaagtggtcgtt
gacgcggtagaaaccgtcgatgccatcatggtcaacgacgagccgcgtctggaaaaagag
cagaaagtggctgagcgccgcgaacgccgtcaactgcgcaagcagatccgggtcgatgcc
ccggccagcgacgttgccgccctgcctgccgatgctccggttgttgccgaagaagcctcc
gacgcagtagagcagcacgatgagcaggccgaaggccagcgtcgttcccgccgtacgccg
cgcaatcagcgtatcgaaggccagcgtcgcaagcgcatcaatgaagatgcccgcagccag
cgtgaagatgaagagcagtctgccgaaggcactacccctaccctgactgcagctgcccag
gcagatgccgctcaggtgaaagtggaagagccggcagttcctgtcatcaccatccccagt
gctgaagcggttgccgccgccctgcaggcctctgctgcgctgaccgagcatgtcgtgcct
gaagccgttgtggccgaggctcacgagcaggctgaagtcgtggccgcagagccagtggta
accgaagcggtagttgctgaagaagcccaggtagcggttgtcaacgagccagtggttgca
gaagttgctgccccggtcattgcggaagccgttgcggtcgaggctccggccatcgaaact
gccgtggttgaagcggcacctgctgctccagcagttgaagaagcggctccggcagtggtt
gtagccgaggttgcccctctggtggttgaacagccagctccggtcgctgagcctgtcatc
gctgacgaggctccggtagctgctgccgtagccgcccctgtgaccaagcaagtcaaacgt
ggtggtggcctgctggccggtgcccgcaaggcctctgcgccaatggcaacaccggctgct
gcccctgccctgccggtacgcgagccggtggatcatgcgccgctggtgcgcagtgaagtg
gcaagctcaggtcgccatggcggcagcaccgctgccgtcaacgttgcaaccagcccggcc
ggtcgtccttga
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