Aeromonas sp. ASNIH5: C2U30_12675
Help
Entry
C2U30_12675 CDS
T05873
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aes
Aeromonas sp. ASNIH5
Pathway
aes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2U30_12675 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aes03021
]
C2U30_12675 (rpoB)
03400 DNA repair and recombination proteins [BR:
aes03400
]
C2U30_12675 (rpoB)
Enzymes [BR:
aes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2U30_12675 (rpoB)
Transcription machinery [BR:
aes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2U30_12675 (rpoB)
DNA repair and recombination proteins [BR:
aes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2U30_12675 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
AUT42465
LinkDB
All DBs
Position
complement(2725882..2729910)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEADPEGEYGLEAAFRSVFPIT
SYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEEILATFFETIGFEVKDGKLMMD
LVPERLRGETATFDIIANGAVVVETGRRVTARHIRQLEKDGITQIEVPVEYVVGKVAAKN
YAHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETLRIDSSSSRL
EALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLGREDETGVGVL
TKDDIVEVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPYRKVIDGVIT
DEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQYMDVSPQQI
VSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVDSGVTVVAKR
GGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCVMLGEPVMAG
DVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTIHIQELACIS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEMQLKEAKKDL
TEEFKILEDGIFGRSRNLLLAAGYSEDRLNKLDRSKWFELAIEDEAKQIELEQIAEQHVE
LKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIC
PVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGEKIDRMIKEQRELHE
MREFLQQVYDLGEKDSQQVNIAELSDDDVRTLVGNLRKGLPVATPVFDGAKEREIKALLK
LADLPESGQISLFDGRTGNAFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgaaaaaaaacgcatacgtaaggacttcggtaagcgagaccag
gtactggacacgccttatctgttgtccattcagctggactccttcaagcagttcatcgag
gctgacccggaaggtgagtacggcctagaagccgccttccgtagcgttttcccgatcacc
agttactccggtagtgctgagcttcagtatgtcagctatcgcctgggtgagccggtattt
gacgtaaaagaatgccagatccgtggagtgacctactccgcgccgctgcgtgtcaagctt
cgtatggttctgtacgaccgtgaagcagctgccggcaccgtcaaagacatcaaggaacaa
gaagtttacatgggcgaaattccgctcatgaccgaaaacggcacctttgtcatcaatggt
accgagcgggtcatcgtctcccagctgcaccgcagcccgggcgtcttcttcgaccacgat
aaaggcaaaacacattcatccggtaaggtgctttataacgctcgcgttatcccctaccgt
ggctcctggctggacttcgagttcgatgcgaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaaactgccagcctccattattctgcgcgccctggacttcagctccgaagaaatc
ctggccaccttcttcgagaccatcggtttcgaagtgaaagatggcaagttgatgatggat
ctggtgcccgagcgcctgcgtggcgagaccgcgaccttcgacatcattgccaatggcgcc
gtggtggtcgagaccggtcgtcgtgtcactgcccgtcacatccgtcagctggaaaaagac
ggcatcactcagatcgaggtgccggtagagtatgttgttggcaaagttgcagccaagaac
tatgcacatccgcagactggtgaaatggtcgtgactgccaaccaggccctgagcctggaa
gcagttgccaacctgtcccaagccggcttcaagcacttcgaggttctgttcaccaacgaa
ctggaccacggtgcctacatgtccgagaccctgcgtatcgactccagctccagccgcctg
gaagctctggtcgagatctatcgcatgatgcgtccgggcgagccgcccactcgcgaagcg
gccgaacagctgttcgagaacctgttcttctcgtccgagcgttacgacctgtctaccgta
ggtcggatgaagttcaaccgccgtctgggtcgtgaagacgagactggcgttggcgtgctg
accaaggacgatatcgtcgaggtcatgaagcgcctgatcgacatccgtaacggtaacgac
gaagtggacgatatcgaccacctgggtaaccgtcgtattcgttccgtcggtgaaatggcc
gagaaccagttccgtgtcggtctggtccgtgtcgagcgtgcggtgaaggagcgcctgtct
ctgggcgatctggacaccctgatgccgcaggatctgatcaacgccaagccgatctccgcc
gcggtcaaagagttctttggttccagccagctgtcccagttcatggaccagaacaacccg
ctgtccgaagtgacccacaagcgccgtatctccgcgctgggcccgggcggtttgacccgt
gagcgtgccggtttcgaagttcgagacgtacacccgacccactacggtcgtctgtgcccc
atcgaaacgccggaaggtccgaacatcggtctgatcaactcgctgtccgtgtattcccgc
accaacgagtacggtttcctcgagaccccgtaccgcaaggtgatcgacggtgtgatcacc
gacgaagtggattacctgtctgcgattgaagaaggcaagtacgtgatcgcacaggccaac
gccgcgaccaccgaagatggccgtctgaaagatgaattgatcccgtgccgtcacaaaggt
gaatccacctttatgaacgccgaccagatccagtacatggacgtgagcccgcaacagatc
gtctctgtggcagcggccctgatcccgttcctggaacacgatgacgcgaaccgcgcattg
atgggttcaaacatgcaacgtcaggctgtaccgaccctgcgcgctgacaagccgctggtt
ggtaccggtatggaacgcgcagtggccgttgactccggtgtgaccgtagtggccaagcgt
ggcggcatgatcgactatgtcgatgcctcccgtatcgttatcaaggtcaacgaagatgag
ctgctgcctggcgaagccggcatcgacatctacagcctgaccaaatacacccgttccaac
cagaacacctgtatcaaccagcgtccgtgcgtgatgttgggcgagccggtgatggcgggc
gacgtactggctgacggcccgtccaccgatctcggtgaactggcgctgggtcagaacctg
cgcgtcgcgttcatgccgtggaacggttacaacttcgaagactcgatcctggtgaacgag
cgtgttgttcaggaagatcgcctgaccaccattcacatccaggaactggcctgtatctcc
cgtgacaccaagctgggtccggaagagatcactgctgacatcccgaacgtgggtgaagcc
gctctgtccaagctggacgagtccggtatcgtctacgtgggtgccgaagtgaagggcggc
gacattctggtcggcaaggtgactccgaaaggtgaaacccagctgactccggaagagaag
ctgctgcgcgccatcttcggtgagaaggcgtccgacgtgaaggactcttctctgcgtgtg
ccgaacggtgtgtacggtaccgtggttgacgtgcaggtctttacccgcgatggcgtggaa
aaagacaagcgcgccaaagaaatcgaagagatgcagttgaaggaagcgaagaaggacttg
accgaagagttcaagatcctggaagacggcattttcggccgctcccgcaacctgctgctg
gccgccggttacagcgaagatcgtctgaacaagctcgatcgttccaagtggtttgagctg
gccatcgaagatgaagccaagcaaatcgagctggagcagatcgctgaacagcacgttgag
ctgaaggccgagttcgataagaaattcgagaacaagcgtcgcaagatcatccagggcgat
gacctggcgccgggcgtactgaagatcgtcaaggtctatctggccgtcaagcgtcgcatc
cagccgggtgacaagatggcgggccgtcacggtaacaagggtgttatctccaagatctgt
ccggtcgaggatatgccccatgacgagtacggccgtccggtcgacatcgtactaaacccg
ctgggtgtaccgtctcgtatgaacatcggtcagatcctcgaagtgcacctgggcctcgcg
gccaagggcatcggcgagaagatcgaccgcatgatcaaagaacagcgcgagctgcacgag
atgcgcgagttcctgcaacaggtctatgacctgggcgagaaggactcccagcaagtgaac
attgccgaactgtctgacgacgacgtgcgtaccctggtgggtaacctgcgtaagggtctg
ccggtggctacacctgtctttgatggtgccaaagagcgtgaaatcaaagccttgctgaag
ctggccgatctgccggaatccggtcagatctccctgttcgacggtcgtaccggtaacgcc
ttcgagcgcaaggtcaccgtgggttacatgtacatgctgaagctgaaccacctggtagac
gacaagatgcacgcgcgttctaccggttcctacagcctggttacccagcagccgctgggt
ggtaaggcgcagttcggtggtcagcggttcggtgagatggaagtgtgggccctggaggct
tacggtgcggcatataccctgcaggaaatgctgaccgtcaagtctgacgatgtgaacggc
cgtaccaagatgtacaagaacatcgtggatggcgaccaccgtatggagccgggcatgccc
gaatccttcaacgtattgctgaaggaaatccgctctctgggtatcaacatcgagctggac
gaagagtaa
DBGET
integrated database retrieval system
