Aestuariibaculum sp. YM273: RBH94_01735
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Entry
RBH94_01735 CDS
T09314
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aest
Aestuariibaculum sp. YM273
Pathway
aest03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aest00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBH94_01735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aest03021
]
RBH94_01735 (rpoC)
03400 DNA repair and recombination proteins [BR:
aest03400
]
RBH94_01735 (rpoC)
Enzymes [BR:
aest01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBH94_01735 (rpoC)
Transcription machinery [BR:
aest03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBH94_01735 (rpoC)
DNA repair and recombination proteins [BR:
aest03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBH94_01735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WMI65894
LinkDB
All DBs
Position
complement(425690..429991)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARKQDKNTVKRFNQISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEPLQKMDFLTEEEYLSILETLPQDNQY
LDDTDPNKFLAKMGAECLIELLARIDLESLSYELRHKANTETSKQRKTEALKRLQVVESL
RESNNNRENRPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILECQMLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKHRKSTPEV
PIKGEGLTFYAPEEVEIAFNEKRVDLNAGIKVRTLDINEDGKLAPTIIETTVGRVLFNQH
VPQAAGYINQVLTKKSLRDIIGQILKYTSVPETADFLDAIRTLGFKFAFQGGLSFSLGDI
IIPAEKQGMIDKANGLVEGITGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINSEDCGTLRGVEVEPLKKND
EVVETLAERIVGRVSLNDVYNPLTDELLVRAGELIEDHIAKAIGETPLEKIEVRSPLSCE
ALQGICAKCYGRNLATGKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LIVKFDGIAEIEDLKTVKGTDSEGNEVDIVISRTSEIKLIDKKTGIALSTNNIPYGSTLM
IENGQELSKGDVVCTWDPYNGVIISEFAGKVRYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLHIEDSKGETMRSYNLPVGSHLMINDGDKITVGKVLVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEIKKYLVKLSNQILV
QENDYVKAGMPLSDGSVTPEDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTLFLEDQLVHKADFIQENDAIFGLKVVEEAGDSVNLKAGQIVTARQL
RDENSLLRREDKALVSARDARPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDSLEGLKENVIVGHRIPAGTGMRKYQDIIVGSKEEFDEMMQVKQELNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagataagaatacagtaaagagatttaaccagatctcaattggttta
gcgtcaccagagtctattttagcagagtctagaggtgaggttttaaaacctgaaactatc
aattatcgaactcataaaccagaaagagatggtttattctgtgagcgtatttttggtcct
gtaaaggattacgagtgtgcttgtggtaaatataaaagaattcgctacaaaggtatcgtt
tgtgaccgatgtggtgttgaagtaacggaaaagaaagtacgtcgtgatagagttggacac
atcaacttagttgtgccaatcgctcacatttggtatttccgttcgttaccaaataaaata
ggttatttattagggttaccatctaagaaattagatatgattatttactacgaacgttat
gtagtaattcagccaggtatcgctaaaaatgaagaaggtgaaccattacaaaaaatggac
ttcttaacggaagaagaatacttaagcattcttgaaacccttcctcaggataaccagtat
ttagatgatactgatccaaacaaattcttagctaaaatgggagctgagtgtttgattgaa
ttattagctagaattgatttagaatcattatcatacgaattacgtcataaagcgaataca
gaaacgtctaagcaacgtaaaactgaagctttaaaacgtttacaggttgtagaatcgtta
cgtgagtctaacaataacagagagaatcgtccggagtggatgattatgaaagtaatccct
gttattccaccagaattacgtccgttagtgccattagatggtggtcgtttcgcaacgtca
gatttaaatgatttataccgtcgtgtaattattcgtaacaaccgtcttaagagacttgtt
gagattaaagcacctgaggtaattttacgtaacgaaaaacgtatgttacaggaatctgta
gactcgttattcgataacacacgtaaatcatcagcggtaaaaacagattctaacagaccg
ttaaaatcattatcagattcattaaaaggtaaacaagggcgtttccgtcaaaacttactt
ggtaaacgtgtcgattattcagcacgttcggtaattgttgttggacctgagttaaaactt
tatgagtgtggtttaccaaaaaatatggcggctgaattgtacaagcctttcgtaattaga
aaattaattgaaagaggtattgtaaaaacagttaagtctgctaagaaaattattgacaaa
aaagagcctgttgtatgggatatcttggagaacgttcttaaaggacatccagtattgcta
aaccgtgctcctacgttacaccgtttgggtattcaagcgttccaacctaagttaatcgag
ggtaaggcgattcaattacacccattagtgtgtacggcgtttaatgcggatttcgatggt
gatcagatggcggttcacttaccattaggcccagaagctattttagagtgtcaaatgtta
atgttggcttctcataatatcttaaatccagcgaacggttcaccggtaacagtaccttct
caagacatggttcttggtctttattatatgactaaacaccgtaagtctactccagaagtg
ccaattaaaggtgaaggtttaacattctacgcaccagaggaagtagaaattgctttcaat
gaaaaacgtgttgacttaaatgccggtattaaagtaagaacattagatattaacgaagat
ggtaagttagcaccaacaattatagaaacaactgttggtcgtgtattatttaaccaacac
gtgcctcaggccgctggttatatcaatcaagtacttactaaaaaatcgttaagagatatt
attggtcaaattcttaagtatacttcagttcctgaaaccgcagatttcttagatgcgatt
agaactttaggatttaagtttgcattccaaggtggtctgtcgttcagtttaggtgatatt
attatccctgctgaaaaacaaggtatgattgataaagctaacggattagttgaaggtatt
acaggtaactataacatgggacttattaccaacaacgagcgttacaaccaggtaattgat
atctggacatcgaccaacgcagagttaaccgagttatctatgaagcgtattcgtgaagat
caacaagggtttaactcggtattcatgatgcttgattctggagcgcgtggatcgaaagag
cagattcgtcagttaacaggtatgcgtggattaatggcgaaacctaaaaaatcgaatgct
ggtggtggagaaattattgaaaacccgattctttctaactttaaggaaggtctttcaatt
ttagaatactttatctctacgcacggtgctcgtaaaggtcttgccgataccgctcttaaa
acggcagatgctggttacttaacacgtcgtttagtagacgtttctcaagatgttattatc
aactcagaagattgtggtacattaagaggtgttgaagtagaaccattaaagaaaaatgat
gaagttgttgaaactttagctgaacgtattgttggtcgtgtatcattaaacgatgtatac
aacccattaactgacgagttattagttagagctggggagttaattgaagaccacatagca
aaagctattggagaaacacctttagaaaaaatagaagtacgttctccattaagttgtgag
gctttacaaggtatctgtgctaagtgttacggtcgtaatctggcaacaggtaaaatggta
caacgtggtgaagctgttggtgttgttgcagcacaatcaattggtgagccgggtacacag
ttaacacttcgtacgttccacgtaggaggtattgctggtaacatttcagaggagaacaaa
ttaatagttaagtttgacggtattgcagaaatcgaagacttaaaaactgttaagggtaca
gattcagaaggtaacgaagtagatatcgtaatttctcgtacgtctgaaattaaattaatt
gataagaaaacaggtattgcattaagtactaataacattccttacggatctactttaatg
atcgaaaatggtcaggagttaagtaaaggtgatgtggtttgtacttgggatccatataac
ggtgtaattatttcggaattcgctggaaaagtgagatacgaaaacatcgaacaaggtgta
acttatcaagtagaaatcgatgagcaaacaggtttccaagagaaagtaatctctgaatct
agaaataagaagttaattccaacacttcatattgaagattctaaaggcgaaaccatgcgt
tcttacaacttaccggtaggatctcacttaatgattaatgacggagataagattactgta
ggtaaggtattagttaagattcctcgtaagtctgctaaggcaggggatattactggaggt
ttaccacgtgtaactgagttattcgaagcacgtaacccttctaacccagcagtagttagt
gagattgatggtgtggtttcttttggtaagattaaacgtggtaaccgtgagattatcgtt
gaatctaaattaggagagattaagaaatatctagttaaattatcgaatcaaattcttgtt
caagagaacgattacgttaaagcaggtatgcctttatcagatggttctgtaactcctgaa
gatatcttaaatattaaaggaccttcagctgttcaacaatacttagtaaacgaggtacaa
gaggtataccgtttacaaggggtgaagattaacgataaacacttcgaggttgttgttaga
cagatgatgcgtaaagttagaatcattgattctggtgatacattattcttagaagatcag
ttagttcacaaagcagactttatccaggagaacgatgcaattttcggattgaaagttgtt
gaagaagctggagattctgttaaccttaaagccgggcaaattgttactgctcgccagtta
agagatgagaactcattgttaagaagagaagataaagcacttgtatcggctagagatgct
agaccagcaactgctacgccaatattacaaggtattactagagcatcgcttcaaacgaaa
tcatttatttcagcggcgtcgttccaggagacaactaaggtacttaacgaagcagcagtg
gctggtaaagttgatagcttagaaggcttgaaggaaaatgtaattgtaggacacagaatt
cctgcaggtacaggtatgcgtaaataccaagacattatcgttgggtctaaagaagagttt
gacgaaatgatgcaagtaaagcaagaattaaattataactaa
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