Alcaligenes faecalis ZD02: UZ73_19105
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Entry
UZ73_19105 CDS
T04157
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
afa
Alcaligenes faecalis ZD02
Pathway
afa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UZ73_19105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afa03021
]
UZ73_19105
03400 DNA repair and recombination proteins [BR:
afa03400
]
UZ73_19105
Enzymes [BR:
afa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UZ73_19105
Transcription machinery [BR:
afa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UZ73_19105
DNA repair and recombination proteins [BR:
afa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UZ73_19105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ALO40191
UniProt:
A0A0M7ERA7
LinkDB
All DBs
Position
complement(4221575..4225837)
Genome browser
AA seq
1420 aa
AA seq
DB search
MKALLDLFKQVTQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVSKVRRERMGHIELACPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFHALM
GAEAVRELLRTIDIDREVERLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKPDWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLELMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYATRELVNGKGEGLFMADVAEVQRAYDNK
EVELQTRLTVRIEEFEKGEDGEWVKTIKRYETTAGRALLSEILPKGMPFTALNRALKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMNDMVVPAVKESILAQASNE
VKEIDKQYSSGLVTAQERYNNVVDIWGKAGDRVGKAMMEQLASEPVTNRFGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTKGGYTMKAILDGGEVIEPLRDLIL
GRVASTDIVNPDNQELVIPAGTLLNEDLVDLIDNLGIDEVKIRTPLTCETRHGLCASCYG
RDLGRGVLVNRGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAALASSVETKTAGTVGF
EIGLRYVTNAKGERVAISRSGEIVIFDDNRRERERHKVPYGATITVGDGDAIKAGQRLAS
WDPLTRPIVSEYTGTVRFENIEEGVTVARQVDEVTGLSTLVVITPKTRGGKITMRPQIKL
LNEQGQEIKIAGTDHMVNISFPVGALITVRDGQQVSVGEILARIPQESQKTRDITGGLPR
VAELFEARSPKDAGLLAEVTGTVSFGKDTKGKQRLVITDLDGVSHEFLIPKEKQVLAHDG
QVVNKGEMIVDGPADPHDILRLKGIEKLANYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTNFITGEQVERSELLNENDRVLAENGIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGMAFHSARKEKEAFEVAERK
AARELENPFASAPEPSEDPVFVSGASEPEQQPEAPEGDQE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgatctctttaaacaagtcactcaggacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaagatccggtcctggtctttcggagaagtccgcaag
ccagagaccatcaactatcgcacgttcaaacccgagcgcgatggcctgttttgcgccaag
atttttggtcccatcaaggactacgaatgtctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtcatctgcgagaagtgtggcgttgaagtcaccgtctccaaggtgcgtcgcgag
cgcatgggtcacattgaactggcctgcccggttgctcacatctggttcctgaagagcctg
ccatcccgtctgggcatggtgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
tttgaagcctggtgcgtgatcgaacctggtatgaccccgctcaagcgcggtcagatcatg
tccgacgacgatttcctggccaagaccgaagaatacggtgacgacttccacgccctgatg
ggcgcggaagccgtgcgcgaactgctgcgcacgatcgacatcgatcgcgaagtcgagcgc
ctgcgtgccgaactgaaagccacaggttcggatgccaagatcaagaagatctccaagcgt
ctgaaagtactggaaggcttccagaaatccggcatcaagccagactggatgatcatggaa
gtgctgcccgtgctgccaccggacctgcgtccgctggtaccactggacggcggccgcttt
gcgacttccgacctgaacgatctgtaccgccgcgttatcaaccgtaataaccgtttgaag
cgtctgctggaactgaaggctccggacatcatcctgcgcaacgaaaaacgtatgctgcaa
gagtccgtggactccttgctggataacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgtcaactgaagtccctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactccggtcgttccgtgattgtggtgggtcctcag
ctgaaactgcaccagtgcggtctgcccaagctgatggcgctggaactgttcaagcctttc
atcttcaaccgtctggaattgatgggtctggctacgaccatcaaggcagccaagaagttg
gtggaaagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtcatgctgaaccgtgcgcctacgctgcaccgtttgggtattcaggcttttgaaccggtc
ctgatcgaaggtaaagcgattcagctgcaccccctggtgtgtgccgcctttaacgctgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcccagctggaagcg
cgcaccctgatgctggcctccaacaacgtgctgttccccgccaacggcgaaccatccatc
gttccttcccaagatatcgtgttgggtctgtactatgcgacccgcgaactggtcaatggc
aagggcgaaggcttgttcatggccgatgtggctgaagtccagcgtgcctacgacaacaag
gaagtcgagctgcaaactcgtctgaccgtccgtatcgaagaattcgagaagggcgaagac
ggtgagtgggtcaagaccatcaagcgttacgaaacgactgctggccgtgccttgctgtcc
gaaattctgcccaagggcatgccattcaccgcactgaaccgtgcgctgaagaagaaagaa
atttcgcgtctgatcaaccagtccttccgtcgctgcggcctgcgtgccaccgtgattttt
gcggacaaattgatgcagtccggtttccgtctggcaacacgtggtggtatttccatcgcg
atgaacgacatggttgtgcctgccgtcaaggaaagcatcctggctcaggcaagcaatgaa
gttaaagaaatcgacaagcagtactcgtccggtctggtgaccgctcaggaacgctacaac
aacgtggtggacatctggggcaaggcgggtgaccgagtcggcaaggccatgatggagcaa
ctggcttccgagccagtgaccaaccgttttggtgaagaagtacgtcaagagtccttcaac
tccatctacatgatggcggactccggtgctcgtggttcggctgcacagattcgtcagctg
gccggtatgcgtggtttgatggccaagcctgatggctccattattgaaacgcctattacc
gcgaacttccgtgaaggtctgaacgtactgcagtactttatttcgactcacggtgctcgt
aagggtctggctgatacggccttgaagacggctaactccggttacctgactcgtcgtctg
gtcgacgtgacgcaagatctggtcattaccgaagacgattgcggtaccaagggcggctac
accatgaaagccatcctggatggtggtgaggttatcgagcccctgcgcgatctgattctg
ggccgtgtggcctcgaccgacatcgtcaaccctgacaatcaggaactggttatccccgcc
ggcaccttgctgaacgaggacctggtcgacctgatcgacaatctgggtattgatgaagtc
aagatccgtactccgctgacttgcgaaacccgtcacggcttgtgcgcaagctgctacggt
cgcgatctgggtcgtggtgtgctggttaaccgtggtgaagccatcggtgttatcgctgct
cagtccatcggtgaaccgggtacccagctgaccatgcgtacgttccacattggtggtgcg
gcttcgcgtgcagcgctggccagctcggtggaaaccaagacggctggtacggtcggtttt
gaaattggtctgcgctatgtgaccaacgccaagggcgagcgtgttgcgatctcccgttcc
ggtgaaatcgtcatttttgacgacaaccgccgcgagcgcgaacgtcacaaagtgccttac
ggcgccaccatcacggtgggcgatggcgatgcgatcaaggctggccaacgtctggcaagc
tgggatccgctgacccgtcctatcgtgtccgagtacaccggtaccgttcgcttcgagaac
atcgaagaaggcgtgaccgtggctcgtcaggtggacgaagtgaccggtctgtcgactctg
gttgtgatcactcccaagacacgtggtggcaagatcaccatgcgtcctcagatcaagctg
ctgaacgagcaaggtcaggagatcaagatcgcgggtaccgatcacatggtcaatatctcc
ttcccggtgggcgcgctgattaccgttcgcgacggccagcaagtgtctgtgggtgagatt
ctggcgcgtattcctcaggaatcgcaaaagactcgggatattaccgggggtctgccacgt
gtggccgaactgttcgaagctcgttcgcccaaggacgccggtctgctggccgaagttacg
ggtacggtttccttcggtaaagacaccaagggcaaacagcgtctggtcattaccgacctg
gacggcgtcagccacgagttcctgattccgaaggaaaaacaggttctggctcacgacggt
caggtggtgaacaagggcgagatgattgtggacggcccagccgatccgcacgacatcctg
cgcttgaagggtatcgagaagctggccaactacattgttaacgaagtgcaggacgtttac
cgtctgcaaggtgtgaagatcaacgacaagcacattgaagtgattgttcgtcagatgctg
cgccgcgtgaacattgtggatgctggtgataccaacttcatcacgggtgaacaggttgaa
cgctccgaactgctgaacgagaacgatcgcgtcctggctgaaaacggtatccctgctacg
tacgaaaacgtgctgctgggtattaccaaggcctcgctgtcgaccgactccttcatctcg
gcggcttccttccaggaaaccacccgcgtgttgaccgaagcggccatcatgggcaaaacc
gacgatctgcgtggtctgaaagaaaacgtgattgtgggtcgtctgattcctgctggtacc
ggtatggccttccattccgcccgcaaggaaaaagaagcctttgaagtggcagagcgcaaa
gcagcccgtgaactggaaaacccgttcgcatcggctcctgagccttcggaagatccggtc
tttgtgtccggtgcctccgagcccgagcagcaacctgaagccccagaaggcgatcaggaa
taa
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