KEGG   Anoplopoma fimbria (sablefish): 129088862
Entry
129088862         CDS       T09102                                 
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04510  Focal adhesion
afb04512  ECM-receptor interaction
afb04518  Integrin signaling
afb04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    129088862 (col6a1)
   04518 Integrin signaling
    129088862 (col6a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129088862 (col6a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    129088862 (col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129088862 (col6a1)
   00536 Glycosaminoglycan binding proteins [BR:afb00536]
    129088862 (col6a1)
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   129088862 (col6a1)
Glycosaminoglycan binding proteins [BR:afb00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   129088862 (col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   129088862 (col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 DUF4191
Other DBs
NCBI-GeneID: 129088862
NCBI-ProteinID: XP_054452091
LinkDB
Position
3:15245749..15270234
AA seq 1003 aa
METLAGLLALLCVFLAGAQPQIDKNRLADCPVDLFFVLDTSESVALRQKPPNFYIDQIVT
FTNNFIDELKEMRHRCDRILTWNSGALHYSDDVKLIRELSDMRTNREALKADIKAIDYIG
KGTYTDCAIKRGLAELLIGGSHYHENKYIVVVTDGHPITGYKEPCGGVQEAANEAKQFGV
KVFAVAISPDQEDTRLTLIATDPRYRQNFTAADDTRTSKMGTIRTIIDMITNETKDVCCS
FECVAAGGPKGGPGDVGAKGETGRPGMPGEKGDVGDMGNPGDPGPVGYSGMKGDRGGKGG
KGDRGHKGYKGDKGQRGNDGIDGRKGEDGFAGLPGCKGSPGSDGLQGESGPKGDPGPYGL
KGGKGDPGRDGEPGRPGNYGPLGPQGDPGPPGSNGDKGERGDDGPSGPDGSRGERGQIGE
KGEQGSRGNRGPRGDLGEPGPRGDQGREGSAGPNGEPGEPGKAGSAGYRGDEGPPGPEGP
KGPRGIKGAPGDRGTMGERGEDGVQGNGTAGCPGFQGYPGSRGETGEPGSKGTPGPKGDD
GDAGDPGNDNNQPGPPGSKGAKGHRGPEGNPGPLGLPGPPGTDECEILDIIMKLCSCCEC
KCAALDLAFIVDSSESIGLTNFGLAKEFIVTVIDRLIKDQQLKFAANESGLSVVQYSGSK
AQEIIRLESDNIIKFKQDVRDMKWLAEATYTGEALDYALSETIQRMRHENKIVIVLTDGR
SDISRDKVPLNVLCGKNLMVGGLGVKDYSGRVPNQEQLGELVCKSDTKPGFSFVLDNFAE
LLDDSFLQNITARICQDKKCPDYKCPISFSESADILVMMDSSASVGQKNFEISKNFVSSL
AGRFLTAERKRGVNVRMGVGQYSRSASMEQVPTNNLTVLIQQTEQAAFQNDGTNVLEAMD
FAMKNLRGRGGRKKLVLFSDGRSQAVTEPLLEKRVREVADAGVEVFVIAVGSQVNEVNLR
TLSSKARRDDIGYAQRHLFRVPDYASLLRGVFHQTVSRRVSIP
NT seq 3012 nt   +upstreamnt  +downstreamnt
atggagactctcgcaggtctcctcgcgctgctgtgcgtcttccttgctggagcgcaaccg
cagatcgataaaaacaggttggctgattgtccggttgaccttttcttcgtgctggataca
tctgagagtgttgccctcagacagaaacctcccaacttttatattgaccagatcgtaact
ttcaccaataacttcatagatgaactcaaggaaatgcgccaccgatgcgaccgcatcctg
acgtggaactcgggagctctgcactacagtgacgacgtcaaactcatccgcgagctgagt
gacatgaggaccaatcgcgaggccctgaaggctgacatcaaggccatcgactacatcggc
aagggcacatacaccgactgtgccatcaagaggggccttgctgagctgctcattgggggc
tctcactaccatgagaacaagtacatcgtggtagtgactgatggtcatcctattaccggt
tacaaagagccgtgtggaggcgtgcaggaggctgctaacgaagccaagcaatttggagtc
aaagtgttcgctgtcgccatctcacctgaccaggaggacaccaggctgacactcatcgcc
acagacccgcgctacagacagaacttcactgctgcagacgacaccagaaccagcaagatg
ggaaccattcgaaccatcattgatatgatcacaaacgagacaaaggatgtgtgttgctct
ttcgagtgcgtcgctgcaggagggcctaaaggaggaccgggagacgtcggcgctaaggga
gaaacaggtagaccagggatgccaggagagaaaggagatgttggtgacatgggcaaccct
ggagatcctggtcctgttggttacagtggaatgaagggagaccgtggtggcaaaggagga
aagggtgatagaggacacaaaggctacaagggagacaaaggtcaaaggggaaacgatggc
attgatggacgcaagggtgaagatggtttcgctggtcttcccggctgtaaaggatctccc
gggtcagacggcctgcagggagagtctggaccaaagggagaccctggtccttatggactg
aaaggaggaaaaggagatcctggaagagatggtgaaccaggaaggcctggaaactatggc
ccactgggacctcagggggatccgggccctcccggaagcaacggggacaaaggagagcgc
ggcgatgacggcccgtcgggaccggatgggagtcgcggcgagagaggacaaattggagaa
aagggtgagcaaggttcccgtggaaacagaggtccaagaggagacttgggggagccaggg
ccccgtggagaccaggggagggagggctcagctggccccaacggagaacctggcgagcct
ggcaaggccggttcggctggctacagaggagatgaaggcccacctggaccagaaggaccc
aaagggccgagaggaatcaaaggagctccgggagacagaggcacgatgggggagagggga
gaagatggtgtgcaaggaaatggaaccgccggttgtcctggtttccagggttatcctggg
tcccgtggagaaactggtgagccgggtagcaagggaacccctggacccaaaggagatgac
ggagacgccggagatccaggcaacgataacaaccaaccaggacctccaggatctaaaggg
gccaaaggtcacagaggtccggaaggcaatccgggacctcttgggcttcccggaccacca
ggaactgatgaatgtgaaattctggatatcatcatgaagctctgctcttgttgtgagtgt
aagtgtgcagctttggacctggcgttcattgtggacagctcagagagtatcggtttaaca
aactttggtctcgccaaagagtttatcgtcacagtcatagacagactgatcaaagaccag
caactcaagtttgcagctaatgagtccgggttgagtgttgtccagtacagtggatcgaag
gcccaagaaattatccgactggaatctgataacatcatcaaattcaaacaggatgtgaga
gatatgaaatggctggctgaggccacatacacaggcgaggcccttgattacgctctgagt
gagacaatccaacggatgaggcatgaaaacaaaatcgtaatcgttctaacagacggacgt
tctgatatttccagggacaaagttcccctcaacgtactctgtggtaaaaatctcatggtg
ggtggtttaggagtgaaggactattcaggacgggtacctaaccaagagcagcttggggaa
ttggtgtgtaagagtgacaccaaaccaggcttttcctttgtcctggacaactttgccgag
ctgctagatgactcttttctgcagaacatcacagccagaatctgtcaagataagaagtgc
ccagactacaaatgtcccatctctttctctgagagtgccgatattttggtgatgatggac
agctcagcaagtgtgggccagaagaacttcgaaattagcaagaactttgtcagcagcttg
gccgggcgtttcctgactgccgagaggaagaggggggtcaacgtcagaatgggtgtgggc
cagtacagccgaagcgccagcatggagcaggtgccaactaacaatttgaccgtgctgatc
cagcaaactgaacaggcggccttccaaaatgacggcaccaacgtgttagaggccatggac
tttgccatgaagaatttacgtggtcgtgggggcaggaagaagctggtgctgttctctgac
ggcaggtctcaggccgtcaccgagcccttactggagaagcgtgttcgtgaggtggcggat
gccggtgtggaggtctttgtcattgctgttggcagccaagtcaacgaggtcaacctgcgc
acgctgtcgagcaaggcgcggcgggacgacatcggctacgcccagcgccacctgttccgt
gtcccagactacgcctctctgcttcgcggggtcttccaccaaacagtctcccgccgggtg
tccatcccctaa

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