Anoplopoma fimbria (sablefish): 129095982
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Entry
129095982 CDS
T09102
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a isoform X1
KO
K08131
collagen type IX alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129095982 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129095982 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129095982 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
afb00535
]
129095982 (col9a1a)
Proteoglycans [BR:
afb00535
]
Extracellular matrix (ECM) proteoglycans
Others
129095982 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129095982
NCBI-ProteinID:
XP_054460583
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Position
9:complement(3545714..3564054)
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AA seq
694 aa
AA seq
DB search
MQSLRRCNGTIIRNQVQFPDLSPHITQTMRLCRGPVGPRGPPGSIGVAGIPGVDGIDGDR
GEDSTVDGGPGPDGENGKDGVPGAAGLPGADGPVGPTGDPGQVGPKGSKGDPGPRGLSGE
PGVGPDGLDGIPGTDGLPGELGKIGGSGAGGKRGSVGLPGSAGPRGPPGVYKGEDLCPNA
CPAGLNGHSGLPGMKGHKGVKGESGEPGRQGHKGEEGEQGMLGEVGSQGLPGQGGPRGLP
GITGSKGDRGPRGKPGDGGPRGIQGGHGDPGQRGALGEPGPAGVQGDRGPSGIRGVPGPK
GEPGLAGPDGREGIPGLPGSKGITAKDGAPGDAGRQGLPGLPGNYGQKGVSGEVGNTGDP
GIVGLMGSPGKQGERGEQGEVGPVGARGGPGGRGERGPGGPLGSPGPRGGKGNPGLPGLP
GPAGYRGQKGDRGAVGLDGPKGDQGSAGAEGTPGDLGELGDQGEPGEKGSTGPPGETGNK
GPEGGRGQEGKEGKSGQLGPRGMQGDTGVPGLPGSQGPAGKTPTDTHIKQVCMRVMQEQL
AQLAASLSRPESGISGMPGPPGPPGPQGPSGENGFPGHSGSRGLPGLKGPAGLIGRKGPK
GDQGDRGDRGPTERGPKGTPGAPGIPGEPGRAAYGSDGRDGERGPRGVPGLLGVPGPPGT
AGMNGYCESSQCVLAMVASPISAKDSSMKGPSDM
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcactcagacggtgtaatgggactataataagaaaccaggttcagtttcctgac
ctttcccctcacatcacccaaacaatgagactctgtaggggccccgtcggtcccagaggc
cccccaggatcgatcggagtagcaggcatacccggagtggatggcattgatggcgacaga
ggagaagactccacagtggacggaggaccaggtcctgatggagaaaacggcaaagatgga
gttccaggagctgcaggccttccgggtgcagatggacccgttggacctactggagatcca
ggccaagtgggccccaaaggatcaaaaggagatcctgggccacgtgggctttctggagag
cctggtgtaggacctgacgggctggatggtatcccgggaacagacgggctcccaggtgaa
ctcggcaaaattggaggatctggagcaggtggaaagagaggttcagtgggtcttcctggt
tctgctgggccacggggtcctccgggtgtgtataaaggcgaggacctgtgtcccaacgct
tgccccgctggactcaatggacactctggtctccctggcatgaaaggccacaaaggggtt
aaaggtgaatctggtgagcctggaagacaaggacacaagggagaggaaggcgaacaagga
atgctgggtgaagttggatctcaaggactaccaggccaaggtggaccaagaggcctccca
ggaataactggatccaaaggggacaggggacctcgtggaaaaccaggtgatggaggtcct
cgtgggatccagggaggccatggcgacccgggtcaaagaggagccttaggtgaacccggg
ccagcaggagtgcagggggatcgaggtccttctggaatcagaggagtaccagggcctaaa
ggagagcctggcctcgctggtcctgatggccgtgaaggaatacctggtctaccaggatcc
aaggggattacagcaaaagatggtgctccaggtgatgctggccgtcaaggacttcctggt
ttgccgggcaattatggccaaaaaggcgtcagtggtgaagtgggtaacacaggtgatcca
ggcattgtaggactgatgggttctccagggaaacaaggcgagagaggcgagcagggagaa
gttggaccagtcggagccagaggaggaccaggtggacgaggagagagagggcctggcggg
cctctaggatcaccaggacccaggggaggcaaagggaacccaggtcttcccggactccct
ggccctgccggttatcgtggccagaagggcgacaggggggcagtcggtctcgatggtcca
aaaggagaccagggttctgcaggagctgaaggaacaccaggagatctcggagaactggga
gatcaaggagaaccaggagagaaaggatcgacaggcccaccgggagagaccgggaacaaa
ggacccgagggcggcagaggacaggagggtaaagagggcaagtcgggccaactgggaccc
cgtggcatgcagggagacacgggtgtaccaggtctgccggggtcacagggaccagcggga
aaaacaccaacagatacacacatcaaacaagtctgcatgagggtaatgcaagagcagctg
gcccagctagcagccagcctgagccgacctgagtccggcatctctgggatgcccggcccc
cccggcccacccggacctcaaggcccctccggagagaacggcttccccggacacagcgga
tcccgaggcctgcccggtctgaagggtccagctgggctcataggtcgcaaaggacccaaa
ggcgatcagggtgacagaggcgacagaggacccacagagcgaggacccaagggaactcca
ggagcccccggtataccaggtgaacccgggagagcggcctacggcagcgacggtcgtgat
ggagagaggggaccccgcggagtccccggtctacttggagtccccgggccccccggtacc
gccggcatgaacggttactgcgagtcgtcgcagtgcgtcctggccatggtggcgtcgccc
atttcagccaaggactccagcatgaagggccccagtgacatgtga
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