Anoplopoma fimbria (sablefish): 129104175
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Entry
129104175 CDS
T09102
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129104175 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129104175 (prpf40a)
Spliceosome [BR:
afb03041
]
Complex A
U1 snRNP components
U1 related factors
129104175 (prpf40a)
Complex B
129104175 (prpf40a)
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
129104175
NCBI-ProteinID:
XP_054470699
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All DBs
Position
16:14506365..14520624
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AA seq
883 aa
AA seq
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MSSSDANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHYPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAGAVQPTGPPGVDSSVAAPGTASTT
NGSPQDEQPKKKSLWTEHKSLDGKTYFYNTETKQSTWEKPDDLKSPAEQMLSRCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAMAPGTAAAPAMQADNTATM
VTVMEAETATAVSEEHLSQAAVHHTAEVKTADAPVASSESSVATEATASIEVTKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFNELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEDKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPVYFAGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKGFLVEVNTGFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEAAFKNMLKLATPPLEPETTWEGIRERFLKESAFEDVTLESERRRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHKKKKRSQSKSPSERSSSGE
SERSYKKSKKHKKKGKKRRHKSASPDTDNEKKGRERDGKREKDLEKDKENDKSRGKSRSD
SKQKSPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggatgctaataatggcccgagccaagcgccaccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcattaccctccc
attggaatgcctccaatgggacagagaccgcccagcatgactcccatgcctcctggtata
attccccctggtataatgccaccaatgggggcaccgccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgcctcctcgcatgccagctggggctgtacaa
ccaacgggaccgcctggtgttgactcctcagttgcggcacctggaacagctagtaccaca
aatggatctccacaggacgaacaaccaaagaagaagtccctgtggacagaacacaaatca
ttggatgggaagacctatttttacaatacagaaaccaagcagtccacatgggagaaacca
gatgatctcaaatctcctgcagagcaaatgctgtccagatgcccttggaaggagtacaag
tcagacacagggaagccttattattacaactctcagacgaaggagtccagatggaccaaa
cccaaagagctggaagatctggaagctatgatcaaagcagaggagaatgggacggcagag
gcaatggctcctggcaccgcagcagctcctgcaatgcaagcagacaatacagccactatg
gtaaccgtaatggaggcagaaactgcaacagcagtctcagaggaacacctgtctcaggcg
gccgtgcatcacacagctgaggtcaagactgcagatgcacctgtggcttcctcagagagc
tcagtcgctacagaggccacagccagtattgaagtcacaaaagaagaacgtccagaactt
cagaagaaaacttacaaatggaacacaaaagaggaagccaagcaggccttcaaagagctg
ctgaaggagaagggtgtgtcctcaaactcttcctgggaacaggccatgaagatgattatc
aatgatcctcgctacagtgcccttcccaaactgagtgagaagaaacaggcgttcaatgcc
tacaaagtccaaacagaaaaggaagaaaaagaggaggccagaattaaatacaaggagtcc
aaagagacctttcagaggttcctggagaaccacgagaagatgacatctaccaccagatac
aagaaagcagagcagatgttcaatgagcttgaggtgtggagctgcgtaccagagagagac
aggctggagatctatgaagatgttttgttctacctcgctaagaaggagaaggagcaagcc
aagcagcttaggaagagaaactgggaagctctgaagaacattttggacaacatggccaac
gtcacataccgcaccacctggtccgaggcccagcagtacctgctagacaaccctaccttt
gcagaggatgaggagctgcaaaatatggacaaagaggacgccctcatttgttttgaggag
cacatccgagctctggagaaggaggaggaggaggacaaacagaagactcttctcagggag
aggagacgacaacgcaagaaccgagaggccttccagaaattcctggacgagctccatgac
cacggtcagcttcactccatgtctgcctggatggagatgtacccgaccctgagctcagac
atccgcttcgccaacatgctggggcagccggtctacttcgcaggttccactcccctagat
cttttcaaattctatgtggaggacttgaaagcccgctaccatgatgaaaagaggatcatc
aaagatattcttaaggacaaaggctttctggtggaagtcaacactggctttgatgacttt
ggatcagtcatcagctcagacaagagagccaccacactggatgcaggaaacataaagctg
gcattcaacagtttactggagaaggcagaagccagagagagagagcgagagaaggaggag
gccaggaaaatgaaaaggaaagaagcggcctttaaaaacatgctgaagctggccacacca
ccactggagccagagactacatgggaggggattagagagagattcttaaaagaatcggcc
tttgaagacgtgactctggagtcggagagaagacggatattcaaagacttcatgcatgtc
ttagagcatgaatgccaacatcaccattccaagacaaagaagcactcaaagaagtccaag
aagcaccacaggaaacgatcacgctctcgatcgggctcagagtctgaggatgatgaatac
cacaagaagaaaaagaggtcacaatccaaatctccctctgaacgctcatccagtggagaa
tccgagagaagctataaaaaatccaagaagcacaagaagaagggcaagaagagacgtcac
aagtctgcatcgccagacaccgacaacgagaagaaaggaagagagcgcgatggaaagcgt
gaaaaggacttagagaaagataaagagaacgacaagtctcgggggaaatctcgctcagac
tctaaacagaagtctcctaaaagaaaagctgcaaaagaggagggtggctgggatacgtca
ggcagtgagctgagtgaaggagagctggagaaaaggagaagaactttactggaacagctg
gatgcaccttga
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