Anoplopoma fimbria (sablefish): 129104556
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Entry
129104556 CDS
T09102
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
afb04040
]
129104556 (scn1laa)
Ion channels [BR:
afb04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
129104556 (scn1laa)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
FUT8_N_cat
FraC
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
129104556
NCBI-ProteinID:
XP_054471255
LinkDB
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Position
16:complement(13566176..13589093)
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AA seq
1978 aa
AA seq
DB search
MAQLLVPPGPDSFRPFSRESLKAIERRITEEKAKKPKGEKKKRNDENVLKPSRDLEAGKS
LPFLYGDTPKGLVSTPLEEMDPFYCNQRTFIVLNRGNVIFRFNAAPALYLLSPFNLLRRI
SIKILVHSLFNMLIMCTILANCVFMTQNGLPEWAKDVEYAFTAIYTLESLIKILARGFCI
GKFTFLRDPWNWLDFSVIVLAYVTELKGLGNFSALRTFRVLRAFKAISVIPGLKTIVAAL
FQSVKKLANVMILTVFCLSVFALIGLQLFMGHLKQKCLRTILNSTSVGPSYNGSDVNGST
FNWETYSSDSSNYYYLPGRRDPLLCGNGSEAGHCPEGFVCVRAGKNPDYGYTSFDSFGWA
FLSLFRLMTQDYWENLYQQTLRASGKPYMIFFVLVIFLGSFYLINLILAVVAMSYEEQSQ
ATIKEAIEKEEEFKAMIEQLKLQQEDAQAVATAAAAENGEASDNVTGPESSSDGSKLSSK
SAKERRNRRRKKKEEGKGADEKLPKSESQDSIRKTRCRFSVEANQMNYDMKCSSAHQSFL
SFRGPLLSPRRNSRTSIFSFRSQVQDMGSENEFADDENSIFEDNLSRRGSLFLPRSRDRR
SSSMSQRSFLSHLLLSSNGIKPSSVDCNGVVSLVGGNSLPPSPGGLLLPKADTTDTEYRQ
ASGGTHQEFMNFLEGPEARQRAHSIASVITSTMEELEESRQKCPPCWYDFANTYLIWECC
PAWLKIKRVVNQIVMDPFVDLTITICIVLNTLFMAMEHYPMTNGFSFMLSVGNKIFTGIF
TAEMVLKIIALDPYYYFQERWNIFDGIIVSLSLIELWLENVGGMSVLRSFRLLRVFKLAK
SWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKQYKDCVCKISPECTLPR
WHMSDFSHSFLIVFRVLCGEWIETMWDCMEVAGTGKCITVYMMVMVIGNLVVLNLFLALL
LSSFSADNLAGNDEDNEMNNLQVAIGRIHNGLASAKSVLQSSCNSFCLRRKKKGKGEDRS
LDELHKPLGPNGIPNHTIKDFPRNGNGDVTGVDKNGDKYIVISKSDDSIMSFINNPSLTV
IVPIAVGESDFENLNTEDFSSLSSDAAGCHVVRMLFSSEGSTIDCLPGGDRESVDFELEE
AMEPDACFTDGCVQKFQCCQVNAEVGWWKVWWTLRKTCYRIVEHNWFESFIIFMILLSSG
ALAFEDVYIEKRKTIKTVLEFADKIFTYIFILEMLLKWVAYGYAKYFTNAWCWLDFLIVD
VSLVSMAASALGYSELSAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIFNVLLV
CLIFWLIFSIMGVNLFAGKYGHCVNTTSNKDFHVSEVKDMIQCKNMTNARWKNYKINFDN
VGMGYLALLQVATFKGWMDIMYAAVDSQSKQEEQPEYERNMKMYLYFVVFIIFGAFFTLN
LFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKIQGYIFD
LTTKQAFDIIIMLLIWLNMVAMMVETEDQSEEMGKILHKINIAFIVIFTGECLLKMIALR
HYFFTNGWNVFDFIVVVLSILGLFLSKLIEQYFVSPTLFRVIRLARIGRVLRLIKGAKGI
RTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKRERGIDDLFNFETFGNSMIC
LFQITTSGGWDGLLAPILNKHDDECNNTTEHPGSHVKGDCGNPPVGITFFVSYIIICFLI
VVNMYIAVILENFSVATEESADPLSEDDFEIFYEVWERFDPHATQFMEYNKLSEFADALD
PPLRIAMPNKMELISMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDILRGQMEERFMAS
NPSKVSYEPITTTLRRKQEDTSATVIQRAFKEYVRKHTARNPPDTSSDNIQKDKTTIDKG
ELVSGKLQDTSSADKSELAPSTAPQPSCNNETTNGKNKYEKDKSEKEVEGKDVGEQYK
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccaccaggtccagacagcttccgcccctttagccgtgagtcc
ctcaaagccatcgaaagacgtatcacagaggagaaggccaagaagcccaagggagagaag
aaaaaacgcaatgatgagaatgtgctcaagcccagccgagacctggaggcgggcaaatcc
ctcccttttctgtatggggacactcctaaaggcttggtgtcgacaccgctggaggaaatg
gatcccttctactgtaatcagagaacttttatagtattaaacagaggaaatgtcatcttc
cgattcaacgccgctcctgccttgtacctcctgagccccttcaaccttcttagaagaata
tcaataaagattttggtacactcattgttcaatatgttgatcatgtgcacaatcctcgcc
aactgtgtatttatgacacagaatggattgcctgaatgggcaaaggatgtggagtacgca
ttcaccgcaatttatacgcttgaatccctcattaaaattttagctcgagggttctgcata
ggaaagttcacctttctaagagatccctggaactggctggatttcagtgttattgtcttg
gcgtatgtaacagagttaaagggcctaggcaatttttcagcacttcgcacattccgagtg
ctaagagcttttaaagcaatttcagttatcccaggcttgaagaccatcgttgctgcattg
ttccagtcagtgaagaagcttgcaaatgtgatgattctcaccgtcttctgcttgagcgtc
ttcgccctcataggattacaactgtttatgggccatttaaagcaaaagtgtttacggaca
attcttaattccacatcagttggtccatcatacaatgggagtgacgtaaatggaagcaca
ttcaactgggaaacatactcgagtgatagcagtaattattattaccttccaggaagacga
gatccattgctttgtggaaacggcagtgaagctgggcactgtccagaggggtttgtttgc
gtcagagcgggaaagaacccagactatggttacaccagttttgactcatttggttgggct
ttcctctctctgttcagactgatgacccaggattactgggaaaacctttaccagcagacg
ttgcgggcatctgggaagccatacatgatcttttttgtgctggtgatattccttggttcc
ttctacctgatcaacctgatcttggccgtagtagctatgtcctacgaggagcagagccag
gccaccataaaggaggcgatagagaaggaggaagagtttaaggccatgattgagcaactg
aaactgcagcaagaggacgctcaggcagtagcaactgcagctgctgcagaaaatggggag
gccagcgataatgtcactggccctgagagctcctctgacggctccaagctcagctccaaa
agtgccaaagagagacgcaacagacgaagaaaaaaaaaggaggagggcaaaggggctgat
gagaagcttcctaaatctgagtcacaggacagtataaggaaaactcgctgccgcttctct
gtggaggcaaaccagatgaactatgacatgaaatgttcatctgcacatcagtcctttctg
agttttcgtggacccctcttgtcacccagacggaacagcaggaccagcattttcagtttc
cgaagccaagtgcaggacatgggctcagaaaatgagtttgccgatgatgagaacagcatt
tttgaggacaacctgagtcggaggggctctttgtttcttccaaggagtcgggatcgacgc
agcagcagtatgagccaacgcagtttcttgtcgcatctcctactttcatccaatgggatc
aagcccagctctgttgactgcaatggcgttgtttctctggtgggtgggaattcactccca
ccgtcacctggggggctccttctgcctaaagctgacaccactgacacagagtacaggcag
gccagtggaggaacacaccaggagtttatgaacttcctcgagggcccagaggccagacag
agagctcacagtatagctagtgtcataaccagcactatggaggagcttgaagaatcgagg
cagaagtgtcctccttgctggtacgattttgccaacacctacctcatctgggaatgttgt
ccagcatggctgaagatcaagagggtggttaatcaaattgttatggatccatttgtggac
ctaaccatcaccatctgcattgtactcaacacattgtttatggccatggagcattatcca
atgaccaacggtttctcctttatgctgtctgtgggcaacaagatattcactggaatcttc
acagctgaaatggtcctcaagatcattgcgttggacccatactattacttccaggagaga
tggaatatttttgatggaatcattgtcagtttaagcttgatcgagctttggttggaaaac
gtgggtggcatgtctgttctgaggtcattcagattgctgagagtattcaagttggctaaa
tcgtggcccacacttaacacactgatcaaaataattggtaattcagtgggggctttgggc
aacctgacgctggttttggccattatcgtcttcatctttgctgtggtcggcatgcagctg
tttggaaaacagtacaaggactgtgtgtgtaaaatctctcctgaatgtactctgccccgt
tggcacatgagtgacttctctcattcattcctcattgtgttccgagtgctttgtggagaa
tggatagagaccatgtgggactgtatggaggtggcggggaccggaaagtgcatcactgtc
tacatgatggtcatggttattggaaaccttgtggtgctgaacctgttcctggccttgctg
ctgagttcattcagtgctgacaatctggcagggaatgatgaagacaacgaaatgaacaac
ttgcaggttgccatcggacggattcataatggtttggcctccgccaagtccgtgcttcag
agcagctgcaacagtttctgcctcaggaggaagaagaaagggaagggtgaggacagatct
ctggatgagctccacaaacctttagggccgaatggtatccccaaccataccatcaaagac
tttcctaggaatggaaatggggatgtgaccggagtggacaaaaatggagacaagtacata
gtcattagcaagagtgatgattctataatgtctttcatcaacaatcccagtctgactgtc
attgttcctattgctgtgggagagtctgactttgaaaatctcaacacagaggacttcagc
agtctctcgtctgatgcagcaggatgccatgtggtaaggatgctcttctcctctgagggc
agcacgatagactgtttgccaggcggggacagagagtctgtagactttgaattggaagaa
gctatggaacctgacgcctgctttactgatggctgtgtgcaaaagttccagtgctgtcag
gtaaatgcagaagtgggatggtggaaggtgtggtggacgcttagaaagacctgttaccgg
atcgtggagcacaactggtttgagagcttcattatcttcatgatcctgcttagcagtgga
gcactggcatttgaggatgtctacattgagaagaggaagaccattaaaacagtgttggaa
tttgctgacaaaatcttcacctacatcttcattctggagatgttactgaagtgggtggca
tatggatatgccaagtattttacaaatgcctggtgctggctggacttcctcattgttgat
gtctcactcgtcagtatggcagccagtgctctgggatattctgaactgagtgccatcaag
tctctgagaacccttcgagctttgaggccactgagagccctgtcaaggttcgaaggcatg
agggtggttgtcaatgccctgcttggagccattccttccatcttcaatgtgttgctggta
tgtctcatcttctggctcatcttcagcatcatgggagtcaacctatttgcggggaagtac
ggccattgtgtcaacacaacctcaaataaggatttccatgtatcagaggtgaaagacatg
atacagtgtaaaaacatgaccaatgctcgctggaagaattataaaatcaactttgacaat
gttggcatgggttaccttgcactgctgcaagtggctacattcaagggctggatggacatc
atgtatgctgctgtggactctcaaagcaagcaagaagaacaaccagaatatgagagaaac
atgaagatgtacctgtatttcgttgttttcataatattcggagccttcttcacactcaat
ctctttattggtgtcattatagacaatttcaatcagcaaaagaaaaagtttggaggtcaa
gacatcttcatgactgaagaacagaagaaatactacaatgccatgaaaaagctgggatcc
aagaaaccacaaaagcctattcctagaccattaaacaaaattcaaggatacatctttgac
ttaaccacaaaacaagcattcgatataataataatgcttctaatatggcttaacatggta
gccatgatggtggaaactgaagatcagtctgaagaaatgggcaaaattctccacaaaatt
aatatagcattcattgtcatcttcactggagagtgtttgctgaaaatgattgcacttcgc
cattactttttcacaaatggttggaatgtatttgatttcatcgtcgtcgtcctgtcaatc
ctgggcctatttctctcgaaactgatcgagcagtattttgtttcgccaaccttgttcaga
gtcatccgcttggcccggattggccgcgtcctccgccttattaaaggtgccaaaggaatc
cgcacactcctgtttgccttgatgatgtcacttcctgccttgttcaacattggtctctta
ctcttcttggtgatgtttatctatgccatctttggcatgtcaaactttgcttatgtcaag
agggaaagaggcatcgatgaccttttcaattttgagacatttggcaacagcatgatctgt
ttgttccagatcaccacttcaggaggatgggatggcctacttgctcccattctcaacaaa
catgacgatgagtgtaacaataccacagagcatcctggcagtcatgttaagggagactgt
gggaatcctcctgtgggcatcactttctttgtgagctatatcatcatctgtttcctgatc
gtggtgaatatgtacattgcagttatcctagaaaacttcagtgtggccactgaggagagc
gctgacccactaagtgaggatgattttgaaattttttatgaggtctgggaaaggtttgat
cctcatgcaacacagttcatggagtacaataagctgtcagaatttgcagatgctctggac
ccaccattgcgcatagccatgcctaacaagatggaactgatctctatggacctaccaatg
gtgagcggtgaacgcatacactgcctggacatcctgtttgcgtttacaaaacgtgttctg
ggcgagggtggggagatggacattctaagggggcagatggaggagcgcttcatggcctcc
aatccttctaaagtgtcttacgaacccattactacaaccctccgccgcaaacaggaggac
acatcagccactgtcatccagagagcattcaaggagtatgtaaggaaacatactgctagg
aatccccctgacacatccagtgataacattcaaaaggataaaacaaccattgacaaaggg
gaacttgtctcaggcaaactacaagacacttctagtgccgataaaagtgaactggcacct
tcaacagcccctcaaccttcatgtaacaatgagacaactaatggaaaaaacaaatatgaa
aaagacaaaagtgaaaaggaggttgagggcaaagatgttggagagcaatataagtaa
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integrated database retrieval system
