Anoplopoma fimbria (sablefish): 129111015
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Entry
129111015 CDS
T09102
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1 isoform X1
KO
K24682
patched domain-containing protein
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
afb04990
]
129111015 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
afb04990
]
Other domain-containing proteins
Patched domain-containing proteins
129111015 (ptchd1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
TctA
Motif
Other DBs
NCBI-GeneID:
129111015
NCBI-ProteinID:
XP_054479279
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All DBs
Position
21:complement(4418712..4429860)
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AA seq
964 aa
AA seq
DB search
MLRQVLHAGLRTSFHALGRFVASHPVFFASAPVLLSILLGASFSRYRVEEDVESLLAPKH
SLAKIEGNLVDSLFPVNRSKHALYSDLQTPGRYGRVIITTRKGSVLDPVHLDTILKLHKR
IYQMQVTVPATGVNSFNYSFSYLCLPDDKNVCIIDDIIRAMEEIQSARTSNSSGPILRYP
ITQLADGRQAYIGHQLGGVQGWGPSGAVRGQGTGARGEGVRSARALQLTYYLQARGGLMD
QVASQWEKAFCAELQHFAALHPKLGLFPSTSSSLRTDFQFSSVLAHQPLLASLGACGVLA
VLCCSMRDCVRSKPWLGLLALLSITLSGLTAAGILNLTRATYNSTYLGIPFVMLGHGLFG
SFEMLSSWRRTREDQHVKERVASVFEDVMLRFSGSTMLHLMTLGLAASPLTNMEAVRLFC
RTAALAVTISYVYMLSFYSSCLVFTGYLETGYRHGCFCRRVPKPDRLDSKPAWYRCLMYT
RYQDEAPTTNPPHGVAHSHSPTPNSTLTHTHAHPNAHPHVANNPAADEHAHVANSTLTHP
HVHTHPTVIIDPNPQDSHLLLGCVRRCYGDWITNTYVKPFVVLLYLVYISFGLMGFLQVT
QGSDPSALVAMDTATVLYTRAQQRYFSSYSPVIGFYIYESAPYWNASVQRDLLEYAKGFQ
RISWLEAYLNYLSDRNQSTSQPRENFTNTLRHSFLREPQFAHFADDIIFAERGQGEEPDV
AASRIFLVAKTTENKREEMSVLLDTLRRLSLTSRVRFLIFNPSFVYLDRYAAAVSSPLRH
SLLAVLFLLGLSSLAVVEPLVSVWLGLTLLSVQFGVLGFMTLWGVELDCMSVLCLISALG
HSADCSGPLLCGFSSGRGDSRTRWVRVALERHGVPSLQTLICYGAALVPVGSVRSNLTHT
LFRCLTLTAGCSALHTLAFLPTLLTFLPPSKSRGLPPDGEGQRQEVECVEMNDSTRVVDQ
ITTV
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccaggtgttgcacgcaggcctgaggacctccttccatgctctcggccggttc
gtggccagccacccggtgttcttcgcctctgcgccggtgctcctctccatcctgctgggg
gccagcttcagcaggtaccgtgtggaggaggacgtggagagcctgctcgcacccaaacac
agcctggccaagattgagggcaacctggtggacagcctgttccccgtgaaccggtccaaa
cacgctctgtactcagacctgcagacaccgggccgatacgggagagtgatcatcaccacc
cgaaaggggagcgtgctggacccggttcacctggacaccatactgaagctccacaagcgg
atctaccagatgcaggtgacggtcccggccaccggtgtcaacagcttcaactactccttc
tcctacctctgtctccccgacgacaagaacgtctgcatcatcgacgacatcatccgcgcc
atggaggagatccagtcggcacgcacctccaacagctccggcccgatcctgcggtacccg
atcacgcagctggcggacggacggcaggcgtacatcggccaccagctgggcggcgtgcag
ggctggggtccaagcggggcggtgcgaggccaggggacgggagccaggggagagggtgtg
cgttctgccagggcgttgcagctcacctactacctccaagcccgcggcggcctgatggac
caggtggccagccaatgggaaaaggccttctgcgccgagttgcagcactttgcagcgttg
caccctaaactggggctgttcccttctacttcctcttctctgaggacagacttccagttc
tcctcggtgctggcacaccagcccctgttggccagcctgggggcgtgcggcgtgctggct
gtcctctgctgctccatgagggactgtgtgaggtctaaaccctggttgggactgctggct
ctgctgtccatcacactgtcaggcctcactgctgctgggatactcaacctgacccgggcc
acctacaactctacgtacctgggcatccctttcgtcatgcttggtcacgggctcttcggc
tccttcgagatgctgtcgtcatggagacgaacccgcgaggaccagcacgtgaaggagcgc
gtggcgagcgtcttcgaggacgtcatgctgcgtttctccggctccaccatgctccacctg
atgaccctgggcctggccgcctcgccgctcaccaacatggaggccgtccggctcttctgc
cgcaccgccgccttggccgtcaccatcagctacgtctacatgttgtccttctacagctcc
tgtctggtgttcaccggatacctggagaccgggtacaggcacggctgcttctgccggcgg
gtccccaaaccggaccggctggactccaaaccggcctggtacaggtgtctcatgtacacc
cgctaccaggatgaggctccaacgaccaacccgccacacggggtcgctcacagtcactcc
cccacgccaaactccaccctcacacacacgcacgcacacccaaacgcacacccacacgtg
gcgaacaaccctgcggcggatgaacacgcacacgtcgctaactccacactcacacatccg
cacgtgcacacgcatcccacagtgatcatagaccctaatcctcaagactctcaccttttg
ctggggtgtgtgaggcgttgctatggcgactggatcactaacacctatgtcaaacccttt
gttgttctgctgtatctggtttacatctcctttggattgatgggcttcctgcaggtgacc
cagggttcagaccccagtgcacttgttgccatggatacagcgacagtactgtacacccgc
gcccagcagcgctacttcagctcgtactcccccgtcattggattttacatctacgagagc
gccccctactggaacgcctcggtgcagcgggacctgctggagtacgccaaaggcttccag
cgaatcagctggctggaagcctacctgaactacctgtcggatcgcaaccagtccaccagc
cagccgcgggaaaacttcaccaacacactccgccactccttcctccgcgagccgcagttc
gcccacttcgccgatgacatcatctttgcggagcgcggccagggcgaggagcccgacgtg
gcggcgtcccggatcttcctggtggccaagacgacggagaacaagcgcgaggagatgtcg
gtgctgctggacacgctgcgacgcctgtccctgacctcgcgcgtccgcttcctgatcttc
aacccctccttcgtctacctggaccgctacgccgcggcggtcagctcccccctcagacac
tcactgctggcggtgctcttcctgttgggtctgtcctcgctggccgtcgtggagccgctc
gtctccgtgtggctgggcctcaccctgctctccgtccagttcggcgtgctgggcttcatg
accttatggggcgtggagctggactgcatgtccgtgttgtgtttgatctcggccctgggg
cactcggcggactgcagcggccccctgctctgcggtttctcctcgggtcggggcgacagc
aggactcgctgggtgagggtggcgctggagagacacggggttccctctctacagacgctc
atctgctacggcgccgccctggtgcccgttggctccgtacgctccaacctcacacacaca
ctgttccgctgcctcaccctcacggccggctgctcggccctgcacacgctggcattcctg
cccaccctccttaccttcctgcctccctccaagagccggggtctcccgcccgacggggag
ggtcagcggcaggaggtggagtgcgttgaaatgaacgacagcacacgagtggtcgaccag
atcaccaccgtctga
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