Anoplopoma fimbria (sablefish): 129111846
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Entry
129111846 CDS
T09102
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b
KO
K04834
voltage-gated sodium channel type II alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
afb04040
]
129111846 (scn1lab)
Ion channels [BR:
afb04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
129111846 (scn1lab)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
Spem1
New_glue
IQ
Motif
Other DBs
NCBI-GeneID:
129111846
NCBI-ProteinID:
XP_054479951
LinkDB
All DBs
Position
22:7791536..7829664
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AA seq
2027 aa
AA seq
DB search
MAQLLVPPGPDSFCPFVPESLAAIERRIAEEEARRPRAERRNDSDDENGPRPNSDLEAGK
SLPFIYGDIPRGMVSTPLEDLDTFYSNQKTFIVLNRGKTIFRFNATPALYILSPFNPLRR
VAIRVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRMPETGNATNSSSNGTADNDT
ELFGATLLGINTTFAQNSTKSSFNWTEYISDEGNYYFLPGRRDALLCGNGSGAGLCPEGF
LCVKAGRNPDYDYTSFDTFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFL
GSFYLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESG
EYSGRGGPTSESSSGTSKLSSKSAKERRNRRKKRKQREEEEERGGRDKFRKSESEDSIKR
TSFRFSIDANRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDMGSENDFA
DDEHSTFEESDSRRGSLFLPRRLERRCSAVSQTSLGAPRFMLPANGKMHCAVDCNGVVSL
VGGTSVTASPVGLLLPEGTTTDTELKKRRSGFRKPSMDYLDEPVGRQRAMSVASILTNTM
EELEESRQKCPPCWYRFANTCLIWDCCPAWLKIKDIVSTVVMDPFVDLAITICIVLNTLF
MAMEHYPMTKEFNSVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSL
MELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIF
AVVGMQLFGKSYKECVCKISDDCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAG
QTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDEDSEMNNLQIAVGRIQRGFA
FVKSTLRKFFQSFCGAGGGKGSGHAEESKTLDELHSNGKGNCISNHTSVELTKDPSVVYM
TEGNGRPGGGLVVGVGVGVGGDTTGKYEMEECDYMSFIHNPSLTVTVPIAVGESDFENLN
TEDFSSDSSDVEGSKEKLDVEPQRLSSSEGSTVDIRPPGDGVDSVELEPEESLEPEACFT
EGCVSRFQCCQINEEDEHFKIWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDVYI
EQRKTIKTVLEYADKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVAN
ALGYSELTAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFS
IMGVNLFAGKYYYCVNTTTDVNIPIEVVNNKTECLNLVNDSARWKNVKINFDNVGAGYLA
LLQVATFKGWMDIMYAAVDSRDVEDQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIID
NFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNAFQGCVFDCITKQAFD
IVIMILICLNMVTMMVETDDQTKDMDYILYRINLVFIVLFTTESVLKMISLRHYYFTIGW
NIFDFVVVILSIVGMFLSEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALM
MSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSG
GWDGLLAPILNKREPDCDSQLEHPGNNYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAV
ILENFSVATEESAEPLSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRMPKP
NMLQLISMDLPMVSGERIHCLDILFAFTKRVLGESGEMDVLRGQMEERFMASNPSKVSYE
PITTTLRRKQEDMAAVIIQRAFRHYMIRLAMKKASALYKERLKEGIRDPDKDLMVIRKFT
ENSTSDKTDMTPSTASPPSYNSVTKSDKDKYEKENREKENKGKDKKK
NT seq
6084 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggacctgacagcttctgccccttcgtccccgagtcg
ttggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccgcgggcggagcgc
cgcaacgacagcgatgacgaaaatgggcccaggcccaacagcgacctggaggcggggaaa
tccctccccttcatctacggggacatccctagaggcatggtgtccacccctctggaggac
ttggacaccttctacagcaatcagaagaccttcatagtattgaatcgcgggaagacaatc
ttccgtttcaacgccactcctgccttgtacatcttaagccccttcaaccctcttaggagg
gtagctattagagttttagtacactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaaccccccggaatgggccaagaatgtagagtac
acattcacagggatttacaccttcgagtccctcataaagatcctggccaggggcttctgc
gtggggaagttcactttcctgcgggacccgtggaactggctggatttcagtgttatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcgctgcgaaccttcagg
gttctgcgagccttgaaaactatatcagtcatcccaggcctgaagaccatcgtcggcgcg
ctgatccagtcggtgaagaagctatctgacgtcatgatcctcaccgtcttctgcctcagc
gtcttcgccctcatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgc
atgccagagaccggcaacgccaccaacagcagcagcaacggcacggccgacaacgacacg
gagctcttcggcgccaccctgctgggcatcaacaccacgtttgcacagaactccacaaag
agctccttcaactggacggagtacatcagcgacgagggaaattactatttcctcccgggc
cgtcgggacgctctgctctgtgggaacggcagcggcgctgggctctgtccagagggcttt
ttgtgcgtcaaagccggccgcaatccagactacgactacaccagcttcgacacgttcagc
tgggccttcctctccctgttccgactcatgacccaggacttctgggaaaacctctaccag
cagacgttgcgcgcggcgggaaaaccctacatgatcttcttcgtgctggtgatcttcctg
ggctccttctacctggtcaacctgatcctggccgtggtggccatggcctatgacgagcag
aaccaggcgaccatcgaggaggctcagcagaaggaggaggagttccaggccatgctggag
cagctgaagagacagcaggaggaggcgcaggttgccgcggcagcagccacggagagcggg
gagtacagcgggagagggggccccacctctgagtcgtcctcggggacgtcgaagctcagc
tccaaaagtgccaaggagcgacgcaacaggcggaagaagaggaagcagagggaggaggag
gaggagaggggggggcgcgacaagttccgcaagtctgagtccgaggacagcatcaagaga
accagcttccgcttctccatcgatgccaacaggctttcttatgagaagagatgctcctcg
cccaaccagtccctcctcagcatccgaggatccctcttctcacctcggaggaacagccgc
gccagcctgttcagcttccgcggccgggcacgagacatgggctccgagaacgacttcgcc
gacgacgagcacagcaccttcgaggagagcgacagccgccgcggctccctgttcctgccg
cgccgcctcgagcgccgctgcagcgccgtcagccagaccagcctaggggcgccgcggttc
atgctgcccgccaacggcaagatgcactgcgccgtggactgcaatggcgtggtgtcgctg
gtcggcgggacatctgtaacagcctcccccgtaggtctcctgctgcctgagggtacaact
actgatactgagctcaagaagcggcggtctggttttcgcaagccatccatggattattta
gatgaaccggtgggccggcagagagccatgagcgtggccagtatcctcaccaacaccatg
gaagagctggaagagtcgagacagaagtgccctccttgctggtacaggttcgccaacacc
tgcctgatctgggactgctgccccgcgtggctgaaaatcaaggacatcgtcagcacggtg
gtcatggacccgtttgtggatctggccatcacgatatgcatcgtcctcaacaccctgttc
atggccatggagcactaccccatgaccaaagaattcaacagcgtactctcagttggcaac
ctggtgttcaccggcatcttcacagcggagatgtgcttcaagatcatcgccctggatccc
tactactacttccaggagggctggaacatcttcgacggcatcatcgtcagcctgagcctg
atggagctcggcttggccaacgtggagggcctctccgtgctccggtccttcagattgctg
agggtctttaaactggccaagtcttggcccactctgaacatgctgatcaagatcatcggg
aactcggtgggtgctctggggaacctgaccctggtgctggccatcatcgtcttcatcttc
gccgtggtcggcatgcagctgtttggcaagagctacaaggagtgcgtgtgcaagatttcc
gacgactgccagctgccccgctggcacatgcacgacttcttccactccttcctaatcgtg
ttccgggtgctgtgcggcgagtggatcgagaccatgtgggactgcatggaggtggccggg
cagaccatgtgcctgatagtcttcatgatggtcatggtcattggaaacctggtggtttta
aaccttttcctggctctcctcctgagctcattcagcgccgacaacctggcggcgaccgac
gaagacagcgagatgaacaacctgcagatcgccgtgggccggatccagcggggcttcgca
ttcgtcaaatccacattgcggaagttcttccagagcttctgcggcgccggcggaggcaag
ggctccggtcatgcggaggagagcaaaacgctggacgaactgcacagcaacggcaagggc
aactgcatctccaaccacacgtcagtggagctcaccaaagaccccagtgtggtgtacatg
acggagggcaacgggcggccaggaggagggctggtggtaggggtcggggtcggggttggc
ggggacaccacagggaagtacgaaatggaggagtgcgactacatgtcatttattcacaac
cccagcctgacggtcacggtgcccatcgcggtgggcgagtcggacttcgagaaccttaac
accgaagatttcagcagcgactcgtcggacgtggagggcagcaaagagaagctcgatgta
gagccccagcgtctgagctcatccgaggggagcacagtggatatccgtcccccgggagac
ggggtggattcagtggagctggagcccgaggagtcactggaaccggaggcctgcttcaca
gagggctgtgtgagcaggttccagtgctgccagatcaacgaggaggatgagcattttaaa
atctggtggacactcaggaaaacctgctttatcatagtggagcacaactggtttgaatcc
ttcatcatattcatgatcctgctaagcagtggagcactggcctttgaggacgtttacatc
gagcagcggaagaccatcaaaacagtgctggagtacgcggacaaggtcttcacttacatc
ttcatcctggaaatgctgttgaagtgggtggcgtacggcttcgtcaagtatttcaccaac
gcctggtgctggctggacttcctcatcgtagatgtgtccctggtcagccttgtagccaat
gctctgggctactcggagcttaccgccatcaaatctctgaggacactgcgagccctccgg
cccctgagggccctgtctcggtttgagggcatgagggttgtggtcaacgcgctgctgggg
gccatcccctccatcatgaacgtgctgttggtctgcctcatcttctggctcatcttcagc
atcatgggcgtcaacctgtttgcagggaagtactactactgcgtcaacaccaccacagat
gtgaacatccccatcgaagtcgtcaacaacaagacagaatgcctaaacttggtcaacgac
agcgcccgctggaagaacgtcaagatcaacttcgacaacgtcggggccggctacctggct
ctgctgcaagtggcaacatttaagggctggatggacatcatgtacgcagcggtggactct
cgagatgtggaggaccagcctgaatacgaggtgaacctgtacatgtacctctactttgtc
atcttcatcatcttcggctccttcttcaccctcaacctgttcatcggcgtcatcatcgac
aacttcaaccagcagaagaagaagtttggaggtcaggacatcttcatgacagaagagcag
aagaaatactacaacgccatgaagaagctgggctccaagaaaccacagaaaccaatacct
cgaccaacaaacgcattccaaggctgcgtgttcgactgcatcacgaagcaggccttcgac
atcgtgatcatgatcctcatttgccttaacatggtgaccatgatggtggagacggacgac
cagacgaaggatatggactatatcctctacaggatcaacctggtcttcatcgtgcttttc
accacagagagcgtgctcaagatgatttctctgcgtcactattacttcaccatcggttgg
aatatatttgactttgtggtggtgatcctgtccatcgtaggtatgtttttatccgaaatg
atcgagaagtactttgtgtccccgacgctgttccgagtgatccgtctggcccggataggc
cgcatcctccgcctcatcaaaggcgccaagggcatccggacgctcctcttcgccttgatg
atgtcgctccccgccctgttcaacatcggcctcctcctcttcctcgtcatgttcatctac
gccatcttcggcatgtccaacttcgcctacgtcaagcgcgaggcggggatcgacgacatg
ttcaacttcgagacgttcggcaacagcatgatctgcctgttccagatcaccacgtcgggc
gggtgggacggcctgctggcgcccatcctgaacaagagggagcccgactgtgacagccag
ttggagcacccgggcaacaactacaagggcaactgcggcaacccgtcagtgggcatcttc
ttcttcgtcagctacatcatcatctgcttcctcatcgtggtcaacatgtacatcgccgtc
atcctggagaacttcagcgtggccacggaagagagtgccgagccgctgagcgaggacgac
tttgagatgttctacgaggtgtgggagcgcttcgacccggacgccacgcagttcatggag
tacagcaagctctcagactttgcggacgctctcgatccgccgctgcgcatgcccaagccc
aacatgctccagctcatctccatggacctgccgatggtgagcggcgagcgcatccactgc
ctcgacatcctgttcgccttcaccaagcgggtgctgggcgagagcggcgagatggacgtg
ctgcgcgggcagatggaggagcgcttcatggcctccaacccctccaaggtgtcctacgaa
cccatcaccaccaccctgcgccgcaagcaggaggacatggcggcggtgatcatccagaga
gccttccgccactacatgatccgcctggccatgaagaaggcctccgccctctacaaggag
cggctgaaggagggcatccgcgacccggacaaggacttgatggtcatcaggaagttcacc
gagaactccacctcggacaaaacggacatgacgccctccacggcctcgccgccgtcctac
aacagcgtgacgaaatcggacaaggacaaatacgagaaagaaaacagggaaaaagaaaac
aaagggaaggacaaaaagaaatag
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integrated database retrieval system
