Anoplopoma fimbria (sablefish): 129116240
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Entry
129116240 CDS
T09102
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-3
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
129116240 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
afb04040
]
129116240 (cngb1a)
Ion channels [BR:
afb04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
129116240 (cngb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
129116240
NCBI-ProteinID:
XP_054483215
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MDQKKTDLVLEDMGQDEDQEVRDESQKKEDLTGDAEVTKVDQIPPVMDDIQKEAGEAVLA
HMEDRLQQNRLEAARVAEELARKAAEEAVRQLEVEHSAKIVMETLPETNEQLPNILEEEN
EDDPESLMDVCPDEDGATPSSTHVEPASERRDLESPDSQTITQQPDFILFIFISFFIFFI
FNIFIRFILFIIFISFISLILFISFISFIIFIIIIVTTRLSGCNMKETRRGKSNKVQIPV
QVNEAEGGCGVPDICSPVKSFLLRFPRAAECLESCRKLMHDHNLAPPKLSPPPELTQLTQ
ELSLLPKQARRCCPGEDVSSSPTDVLLCPSGSRGGGVGGAPQLRVEDVDPDVVQDVDQGK
GLNIPKIITTPEPGFSTLSALPSKLSAAGDPSVDEDDDELSRTGLKTWSRQGDLLSADDE
MRPLSAASVHSVVVQDRLSELVRLFKGRTERQKDRLLDPDESEEESPSASPIKAPPPPPP
PPPPPPEEKKDDVPSAPEDKDEEEDKEFVLPFKLLGRPVPIPKLPQMPDWVRVLMEYRFP
SSIDPFTDLIYVIWLFCVVAAWNWNVWLIPVRWAFPYQTPENLHLWLLMDYTCDLIYITD
ILVFQPRLQFVRGGDIVCDKKDMRENYMTTERFKMDVISLFPMEILYIFTGVNSLLRFPR
LLKYMAFFEFNDRMEAVMKKAYIYRVIRTSTYLLYSLHINACLFYWGSDYEGLGSTKWVY
NGKGNAYIRCYYFAVKTLITIGGLPDPTTVFEICFQLINYFVGVFAFSIMIGQMRDVVGA
ATAGENYYRACMDSTVKYMNSYNIPGEVQNRIKTWYDYTWKIQGMLDEQELLVQLPAKMR
LDMAVDVNYSIVSKVALFQGCDRQMVFDLLTRLKSVVYLPGDFVCKKGEIGREMYIIKQG
EVQVVGGPDLQMVFVTIRAGSVFGEISLLAGGGGNRRTANVKAHGFANLFILDKKDLAEI
LVHYPESQKLLRKKAKTMLTKDEKPEEKAGAKEAMQVIPPRPDTPEMFKAALKVSQQVGI
EGTFTKLRKTYQPSEGPAEAPPSLSPAPPPSPMHRRSPVPLSAVRDDDDAVSESADSSLI
IRMTPRQRGEELLSVEVTPGEGAEGKMQEKGN
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggaccagaagaagacggacctggtgctggaggacatgggacaggacgaggaccaggag
gtcagagatgagtcacagaagaaagaggatctgaccggagatgctgaggtgaccaaagtg
gaccagatccctccagtgatggacgacatccagaaggaggctggagaggcggttctggct
cacatggaggacagactgcagcagaaccgactggaggcggcccgcgtcgcggaggagttg
gccaggaaagcagcggaggaggcggtccgccagctagaggtggagcattcagctaagatc
gtcatggaaacgctgccagagaccaatgagcaactgcccaacatcctggaggaggaaaac
gaagacgatccagagagcctgatggacgtctgtccagatgaagacggtgccactccttca
tcaactcatgtggagccagcatcggagaggagagacctggagagtccagactcccaaacc
atcacccaacaaccagacttcatcctctttatcttcatcagcttcttcatcttcttcatc
ttcaacatcttcatcaggttcatcctcttcatcatcttcatcagcttcatcagcttaatc
ctcttcatcagcttcatcagcttcatcatcttcattatcatcattgttacaactcggctc
tcaggctgcaacatgaaggagaccagacggggtaaatctaataaagtccagatcccagtt
caggttaatgaagcagaaggtggatgtggagttcccgacatttgttctccggtaaagagc
tttctgcttcgattcccacgcgctgctgagtgtctggagagctgcaggaagctgatgcat
gaccataacctcgctcctcccaagctgagtccgccgccggagctcacccagctgacccag
gagctgtcgctgctccccaagcaggcgcggcggtgctgcccgggagaagatgtttcctct
agtccaacagatgttctgctctgtccctcagggagccgtggtggaggggtgggtggagct
ccacagctgagggtggaggatgtggatccggatgtggtccaggatgtggatcagggaaaa
ggcctcaacatccctaaaatcatcaccaccccagaaccagggttcagcactctgagcgcc
ttgccgtcaaagctcagtgctgcaggtgatccgtctgttgatgaggatgatgatgaactg
tcaaggaccggtctgaagacctggtcccgccagggagacctgctgtctgcagacgatgag
atgcgtcctctgtctgcagccagcgtccacagcgtggtggtccaggaccgactgagcgag
ctcgtccggctgtttaaaggacggacagagcgacaaaaagaccggctgctggacccggac
gagtctgaggaggaaagtccttcagcctcaccgattaaagctcctcctcctcctcctcct
cctcctcctcctcctccagaagagaagaaggatgacgtcccatcagcaccagaagataaa
gatgaagaggaagacaaggagtttgttctcccctttaaacttttgggacgtccagtacca
attcccaaactgccccagatgccagactgggttcgagtcctgatggagtaccggttcccc
tccagcatcgacccgttcaccgatctgatctacgtcatctggctcttctgtgtcgtggca
gcgtggaactggaacgtgtggttgatccctgtccgctgggcattcccctaccaaaccccc
gagaacctccacctgtggctgctgatggactacacctgtgacctcatctacatcaccgac
atcctggtcttccagccaaggctgcagttcgtccgtggaggagacattgtgtgtgacaaa
aaggacatgagagaaaactacatgaccactgagagattcaagatggatgtcatcagcctg
ttccccatggagatactctacatcttcactggagtgaactctctgctcagattccctcgt
ctgctgaagtacatggctttctttgagttcaacgacagaatggaagctgtgatgaagaaa
gcgtatatctacagggtgatccgaacctccacctacctgctgtactctctgcacatcaat
gcgtgtctcttctactggggatcagactatgaaggactgggatccaccaagtgggtctac
aacgggaaaggaaacgcttatattcgttgttactattttgccgtgaagacgttgatcacc
atcggaggacttccagacccgaccaccgtctttgagatctgcttccagctcatcaactac
tttgttggcgtctttgccttctctatcatgatcggtcagatgagagacgtggtcggagcc
gccacagccggggagaactactaccgggcctgcatggacagcaccgtcaagtacatgaac
tcctacaacatccccggagaggtccagaaccgcatcaagacctggtacgactacacctgg
aagatccagggcatgctggatgaacaggagctgctggtgcagcttcctgctaagatgagg
ctggacatggcggtggacgtcaactactccatcgtcagcaaagtggccctgtttcagggc
tgcgacagacagatggtgttcgacctgctgacgaggctcaagtctgtggtttacctgccc
ggagacttcgtctgtaagaagggggagatcggcagagagatgtacatcatcaaacagggg
gaggttcaggtggttggaggtccagacctgcagatggtcttcgtcaccatcagagccggc
tctgtgttcggggagatcagtttgctggcgggaggcggggggaaccgacgtacagccaac
gtgaaggcgcacggtttcgccaacctcttcatcctggataagaaggacctggcagagatc
ctggtgcactacccagagtcccagaaactcctccgcaagaaagctaagacgatgttgacg
aaggacgagaagccagaagagaaagccggagctaaagaggcgatgcaggttattccaccg
agaccagacacacctgaaatgttcaaggcggccctgaaggtgtcacagcaggtgggaata
gagggaaccttcaccaaactgaggaaaacctaccaaccatctgagggcccagcagaggct
cctccctccctctctccagccccccctccctctccgatgcaccgccgctctccggttcct
ctctccgcggtccgtgacgacgacgacgccgtgtcggagagcgccgacagctcgctgatc
atcaggatgacgccacgacagcgaggagaggagctgctcagcgtggaggtgacgcccgga
gaaggagctgaaggaaagatgcaggaaaaagggaattaa
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integrated database retrieval system
