KEGG   Amphiura filiformis: 140155157
Entry
140155157         CDS       T10871                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
afil  Amphiura filiformis
Pathway
afil03013  Nucleocytoplasmic transport
afil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:afil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140155157
  09122 Translation
   03013 Nucleocytoplasmic transport
    140155157
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afil03019]
    140155157
   03041 Spliceosome [BR:afil03041]
    140155157
Messenger RNA biogenesis [BR:afil03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     140155157
Spliceosome [BR:afil03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    140155157
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WDR55 WD40_Gbeta Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_ACSF4 Beta-prop_WDR36-Utp21_1st Beta-prop_SPT8 Beta-prop_WDR41 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_IP5PC_F Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_DCAF12 Beta-prop_NOL10_N WDR90_beta-prop_4th Beta-prop_Vps41 WDR54 NBCH_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 140155157
NCBI-ProteinID: XP_072033983
LinkDB
Position
6:complement(22804001..22827825)
AA seq 310 aa
MSLTTNYQEEILKQRQQLHMTVFAQCISPDGKYLLAGNSYGTIAVYSLNAALSPDANEAA
LKPIFTFKAYDGAIYALTTTEKFLISAGLGEIKAWNWSEIIKKDNVLYSGGGDNHMYAWD
LETGTCTNTFQGHQDYIHSVALFNQSQQIVSASEDGSVRIWDPRNEGEAVGILEPYKHEE
CKRSQLGKWVSCVAVDSGDDWLVCGGGPSLSLWHLRSLSPTVTFDTPNTCPQIVTFHDSS
IISGGNSASIDHWNINGDLKTRVPCTSSSVFSIVINTASQHNRVLSAAGTSANIDIYTNF
GYKAFSLQFC
NT seq 933 nt   +upstreamnt  +downstreamnt
atgtccctcacaactaattaccaggaggagatactgaaacagaggcaacagcttcacatg
acagtatttgcacaatgtatttctcctgatggtaaatatcttcttgctggtaatagctat
ggtaccattgctgtatacagtttaaatgctgccttgagtcctgatgctaatgaagctgcg
ttgaaacccatattcacttttaaagcatatgatggtgcaatctatgcgcttacaacaaca
gaaaaattccttatcagcgctggtcttggagaaatcaaagcatggaattggtctgaaata
atcaaaaaggacaacgttttatattctggaggtggtgataatcatatgtatgcttgggac
ttggagacaggcacgtgtacaaatacattccagggtcatcaagattatatccacagtgtg
gcattattcaaccaatctcaacaaatagtctcagcatcagaagatggatctgtcaggata
tgggatccaagaaatgagggagaggctgtgggcatattagagccatacaaacatgaggaa
tgtaagagaagtcagcttggcaagtgggtttcatgtgtagctgtagattcaggagatgat
tggctggtttgtggtggtggtccatccctctcattatggcatctgagatctctatcacca
actgtgacctttgacacacccaatacatgcccacagattgtgacattccatgatagttcg
atcatctccggtggtaattcagcatccatagatcactggaatataaatggagatttgaag
accagagtgccatgtacatcaagtagtgttttcagtattgttattaacacagcttcacaa
cacaacagggtgctatctgcagcaggaactagtgcaaatattgatatctacacaaacttt
ggctacaaagctttctccctacaattctgttga

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