Amphiura filiformis: 140156740
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Entry
140156740 CDS
T10871
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
afil Amphiura filiformis
Pathway
afil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140156740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140156740
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
140156740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
Nup35_RRM_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
140156740
NCBI-ProteinID:
XP_072035787
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All DBs
Position
7:10750178..10774070
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AA seq
464 aa
AA seq
DB search
MPLCTTKVPKMCEYVRIVEEEADDEPIELPSEEDGTMLLSTLTAQFPGASGLKYRNPDTG
TLRGLRVFDGRIQAPDGHWGDTLYIAVFPKGEKGEEKNKRKGEEHQENTAAKNRRVERKC
TDLIVLGLPWKTTEPAMRTYFEQFGELLMCQVKKDSDGNSKGFGFVRYKDYDVQMKVVAQ
RHMIDGRWCDVKIPDSRVGRNEADAKKMFIGRITADMTDEDLYTYFSTYGEVTDVYFPKP
CRGFAFVTFSNAEAAQKLALEDHIIKGTSVYVSNAEPKNPRQGPGMRGVADGNPLNTMFA
QFGQGFAGQGQGGRYKDYRGKRGSHQGGYGNQGGFSNQGSMASNQGPPNQGQPNMSNMGG
FHMNPMLAAALSQASWGMMSNMLAQGMGMGMQGGGSNPAMQGGNMQPQQQQPQGQGQTTQ
GQATQNQTSNAGYAGTQGIGWGGGSGDASAGFGFGGSAKADSGW
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgtgtactacaaaagttcccaaaatgtgtgaatacgtcagaatagtggaggag
gaagcggacgacgagccgatagagcttccaagtgaggaagatggtaccatgttgttgtcc
acactaaccgcacaatttccaggagcttcaggtctaaaatatcgcaatccagacacagga
acattacgagggcttcgagtatttgatggtagaattcaggcacctgatggtcattggggg
gatacattatatatagcagtatttccaaaaggagaaaaaggggaagaaaagaataagagg
aaaggagaggaacaccaagaaaacactgcagctaaaaacagaagagtagaaagaaagtgt
acagatcttatagtattaggcttgccttggaaaacaacagaacctgcaatgagaacatat
tttgaacagtttggtgaacttcttatgtgtcaggtcaagaaagattccgatggtaattca
aaaggtttcgggtttgtacgctacaaggattatgatgtccaaatgaaagtagtagcacaa
aggcatatgatcgacggaagatggtgcgatgtcaaaattccagactcacgggtaggtaga
aatgaggcggatgccaagaagatgttcattggtagaatcacagcagatatgacagatgaa
gacctctacacatacttcagtacatacggggaggtaacggacgtgtattttccaaagccg
tgcaggggctttgcttttgtcacattttcaaatgcagaggcagcacagaaattggcatta
gaggaccacattattaagggaactagcgtgtatgtaagtaatgcagaacctaagaatcca
aggcaaggacctggcatgagaggtgtagcagatggaaacccattaaatacaatgtttgca
cagtttggacaaggatttgccggtcaaggacaaggtggacgctacaaggattataggggt
aagagagggagtcatcaagggggatatggtaatcaaggcggtttctccaatcaaggtagt
atggcatcgaaccagggccctccaaaccaaggtcaaccaaacatgagtaatatgggtggg
ttccacatgaatcctatgctggcagcagctttgagtcaggccagctggggtatgatgagt
aacatgttagcccaagggatggggatggggatgcaaggaggtggtagcaaccctgccatg
caagggggaaacatgcagccacaacagcagcagccgcaaggacagggacagacaacgcag
ggacaagccacacagaaccagaccagtaatgcaggttatgcaggaacacagggtattggt
tggggagggggtagtggagatgctagtgctggttttgggtttggagggagtgccaaggca
gattcagggtggtag
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