Amphiura filiformis: 140169757
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Entry
140169757 CDS
T10871
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like
KO
K18735
protein SMG9
Organism
afil Amphiura filiformis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140169757
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
140169757
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
URGCP_GTPase
ABC_tran
MMR_HSR1
NB-ARC
Motif
Other DBs
NCBI-GeneID:
140169757
NCBI-ProteinID:
XP_072049164
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Position
14:complement(14099518..14144006)
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AA seq
535 aa
AA seq
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MATPGSGAGGGGGGGGSARGGRRRRRRGGRDPKHPTDDIEGDSVSSTGSKTPVILAKHGI
DKHGKETGSQDFSMTPGTIATGSQDPSGSGMDQTPTPHFKIKTRQGERGRQGSQPDIAVT
VSKTSVMPSKPGAFTIATTKASTPSTPSMTVEAHASPMSSGTPGQQSVHQVMTRHAGTPQ
VLGIEVPVHNRLALPPEMTQTIKLVDEAFHWCDNAMETLQDQSDFLVIGVLGLQGSGKST
VMSLLTGTQANQPHSSYIFKPQNADIQEQAGHQTRGIDFFVTPERIILLDTQPVLSASML
DYLMGHEKTLPPEMTSAENYAEIQSLQLAAFLFTVCHAVIVVQDWFVDINLIEFLKRAEM
LKPPTPSPGPKHDESSVEETEDYFPNIVFVQNRANHQDFELQSMQAMQQTLDKLFKDSKL
NYKGCASLSHCGIMAGINRKLLPLDVNLFLLPTFNSHINSKEDPSTLMSLLPSCYQGYPS
TELLVKSFRNQMYGATRTQLTHATLTEKNWFHYAARTWEAIKKSSLMSEFNRLLS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggccacaccgggtagtggagcaggaggaggaggaggaggagggggttcggcaagagga
ggcaggagaagaagacgacgtggcggaagagacccaaagcatcctactgatgatatcgaa
ggtgatagtgtatcaagtactggcagtaagactcctgtcatcttagctaagcatggcata
gataagcacggaaaagaaacaggatcccaggatttttctatgacaccgggtaccatagca
acaggttcccaggatccatcagggagtggcatggatcagactccgacaccacactttaag
atcaagacaaggcagggtgaaagaggcagacaaggttcacagccagatatagctgtgact
gtgtcaaagactagtgtgatgccatcgaaaccaggtgcttttacaatagctacaactaaa
gcaagtaccccatcaactcccagcatgacagtagaagcccatgcttcaccaatgagtagt
ggcacccccggacagcagtctgttcatcaagttatgacaagacatgccggaacaccccaa
gtacttggaattgaagttcctgttcacaacagattggcattgccaccagagatgactcag
actattaagctagtagatgaagcattccattggtgtgataatgctatggagaccttacag
gaccaaagtgactttctagtaataggagtactcggtttacaaggatctgggaaatctact
gtgatgtctttactcactggcacacaagcaaaccaaccacatagttcctacatattcaag
ccccaaaatgcagatatccaggagcaagccggtcaccaaacaagaggaatagacttcttt
gtgacaccagagaggatcatcctgctggatacacaacctgtgctgagtgcatcaatgtta
gattatctcatgggtcatgagaagactctaccaccggagatgacatcagcagagaactat
gctgaaatacagtccttacagcttgcagcattcctcttcaccgtctgtcacgctgttatt
gttgtacaagattggtttgtcgacatcaatcttattgaattcttgaagagagctgagatg
ttgaaaccaccaacaccatctccaggaccaaaacatgatgagtccagtgtggaggaaaca
gaggattacttccctaatatagtatttgtacagaatcgagccaatcaccaagactttgag
cttcaatctatgcaagccatgcagcagacattggataaactattcaaagattccaaactg
aattataaaggctgtgcatctctatcccattgtggtattatggctggcatcaacagaaaa
ctgctaccacttgatgtcaatctgttcttgttgccaacattcaactcacatatcaactct
aaagaagatccaagcactctgatgagtctgttgccaagctgttaccaaggataccccagt
actgagctattggtgaagtcattcagaaatcaaatgtatggtgctacaagaacacagcta
acacatgccacactcactgagaaaaactggttccactatgcagccaggacttgggaagcc
attaagaagtcaagtctgatgtcagaattcaacaggctattatcttga
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