Amphiura filiformis: 140172559
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Entry
140172559 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
afil Amphiura filiformis
Pathway
afil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140172559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140172559
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140172559
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140172559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
140172559
NCBI-ProteinID:
XP_072051804
LinkDB
All DBs
Position
16:31106943..31198935
Genome browser
AA seq
2488 aa
AA seq
DB search
MNLDSLSLALSQISNLVVNLTKKNYKQSLSEISCLVSEHGPEADRHLLRCLFSNVDFGGD
AKGSSGKDFHQAQLLTQESATLITKPNFVSTLCYAIDNPLNQQKSLKPSPQLFTQISKIL
KLTKVQEVVFGLALTHSSRAEVRTHASQFVKQKLPDLLRSYIDTDLRSAQEGGLADVSVE
VLHLLLTHLNRSKDQLGIGGSQRDAFLKTIKKDFPPDQVPVVLSSSLYSEKQDVRMDRLL
NDTGVLPKGVMDGSLADMMREIGYGCCTTMDECRKTLVQIGINAISASAVARVIGMMART
HTGLSENMPLQSISGSSVWSDGKDKPEANQTTTWNVDVFVEVVKDLAPHLNFREVVPEMD
HPNFILKDAQGLRIVKNAFLRGLQDVFPIEVLYRRWKNTDGQLSWIQQALSNPDVFCFAD
YPCHTVVTDILKAPPEDDNREIATWKSLDLVETLLTLAEVGKYEQVKNLFGFPIKHCPDM
LLLAMLQVQPTWTPLRHELISTLMPIFLGNHPNSGIVLHYAWHGQGQSPTIRQIVMHSMA
EWYMRGENDQTRLSRILDVAQDLKALSLLLNATPFAFVIDLACLASRREYLKLDKWMTDK
IREHGEPFVQTCVSFLKRRAPQVMGGMPPEPKELPGGGKTGVLPPETIGTMLACLQACAS
SVAPDLAETIMTMVANCSNLLKSRPPPGVIKPNVGLSSLSPAGLNTGQIDPLTGMAGITT
PTTPTNPGLHGFPSNPLGNFGMSQAQQQQQQKPFTPLGAPGLGGLTGSVPSNPHVMPGMR
NDPFSRPPVSAATNNSPFGNPTQPPINPPNKNNGPGPPGAPGPPGPPGTPGVVKPQNKMG
QDLGGVPPFINLPNMDNSLKPPGAPGPSGLQEHLVQVSQYPSHIANDEYSDISNIWPELG
QTFPAEIDDEANSYFQQIYNQPPNPVMSVDEVLQMLKRFKDSQAKKEQEVFKCMLRNLFE
EYKFFPQYPERELHITACLFGGIIEQGLVTYMALGIALRYVLEALRKPHGSKMYYFGIAA
LDKFKNRLKDYPQYCQHLASIPHFAQFPEALIEHVRYGMMSPHQILATTAPATPTTPDSN
AANAFIQFGMMSREPPARQTSTTTATTTPATVTTPAPATISAPPKTPTTTSTTAAAAVGT
KPAAKTTSAAPSIANTTNIDTLLVATPKDLECPEPPEEVQDKVAFLFNNLSQSNLTQKCE
ELVEVLKEEYYDWISQYLVMKRASIEMNFHPLYANFIDQLKISPLGEMCIKETLRNIQVL
LHSDKSDSNFSDRTLLKNLGHWLGMLTLAKNKPILQLDLDLKALLLEAYHKGQAELLYVV
PFVAKILECVTRSRVFKPPNPWTMAIISVLVELHQEPGLKLNLKFEVEVLCKNLNLDINE
IPPAIYLKDYEQLPFIPQRLSGAKKPKDDSPPAFDPIPIPPTPPVPDAIAVPASPITTAT
TTATQGTTTGAATITTTTSSSTAPLPQFSFHDLNTTALSGLAQHVSFNAQLPLFQTHPQL
RSCVRAAVERAVQELVGPVVDRSIKIALTTCEQIVRKDFALDPEETRMRMAAHHMVRNLT
AGMAMITCREPLVLSISNNFKTTCMTAVKGVSQQQKELIEQAAGVVATDNVELACCFIQK
CAVEKAIPEMDRRLATEIELRKHARNENRRYCDPVVLTYQAERMPEQIRLKVGGVPAGQI
AVYEEFARSIPGFQPTPEANQPPGFLAKPMQSYATDEITQIYDKCVQEIEQHLHALMQAG
ASSQHIQVLQMLLEAVVLARNSREIVTALALLQKSVEGLLEGYTPTAMEPELALRYRDCH
VLVLKSLQDQRAYGPQWTNKQVTRVVFESRGEQRYNLDAIEQMLRGHLLNLQAVDMQIAQ
SMENGLNYTAVAFAMNVVRRFLIDDKQSNILNEADLYNTLHILARIANQSPNPPEGLPHL
IELVRQNHDPAFLDKAPGGPTSMMHSGISQAREFDDPPGLREKTEYLLREWVNMFHSPAG
GKDSTKAFSAFVNQMHQQGILKTDDLITRFFRICTELCVDLCYRALSEAAHTPTLTRAKC
FHTLDAFVRLIALLVKHSGDAANAVTKINLLNKVLGIVAGVLLQDHEVRHTEFQQLPYHR
IFSMLLHELNAPENILEAINFQVMTAFCNALHVLRPSKAPGFVYSWLELISHRIFIARML
AMLPQQKGWPMYAQLLIDLFKFLAPFLRNAELPKHTALLYKGCLRVLLVLLHDFPEFLCD
YHYGFCDVMPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLADITQPPRILTNFAAMI
QPASFKKDLDSYIKTRSPVTFLSELRGHLQVSQEPGQRYNIPLMNALVLYVGSQAIAYIH
SKGSTPSMSTITHSSHMDIFQNLVXDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYL
FAEANTEAMQEQITRVLLERLIVNRPHPWGLLITFIELIRNHNFKFWNHEFVHCAPEIEK
LFESVARSCMQQKGSSGQTIPLEGEAHE
NT seq
7467 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactccctttcgctggccttgtctcaaatctccaatttagtggtcaatctc
accaagaagaactacaagcaaagcttatctgagatttcttgtctcgtatcggaacacggg
ccggaggcagataggcatctgctacgttgcctcttctctaacgtggactttggtggcgat
gccaaagggagcagtggcaaggatttccaccaggcccagttattgacgcaggaatccgcc
accttgataacgaaaccaaactttgtctcaacactttgctacgctatcgataatcctcta
aatcaacagaagagtctcaagccttcgcctcaactcttcactcaaatcagtaagatcctc
aaactcactaaagttcaggaagttgtatttggactcgcacttactcactcgtctcgtgct
gaggtcaggactcacgcttcgcagtttgtgaaacagaagttacctgatttactgcgctcc
tacatcgatacagatttacgaagtgctcaagaaggaggtttagccgacgtatcagtcgag
gtccttcatctgttactgacacatctgaatcgatctaaagaccagctcggaatcggtggc
tcccaacgggacgcttttctgaaaactatcaagaaagattttccacctgaccaagtacca
gttgtactgagctcgtcgctgtacagtgagaaacaggacgtcaggatggaccgactcctc
aatgacacaggcgtcctgcccaagggagtgatggatggttcactggcagacatgatgcgt
gagattggctatggctgctgtaccacgatggatgaatgccgtaagaccttagtccaaatt
ggcatcaacgccatctcagcatcggcagtggcaagagttataggcatgatggccagaaca
catacagggttatcagagaatatgccattacagtcgatatctggaagcagtgtttggagt
gacggaaaggacaagccagaggccaaccagacgacaacgtggaacgttgacgtattcgtg
gaggtggtcaaagacctggctccgcacctcaacttccgcgaggttgtcccagagatggac
catccgaatttcatcttgaaggatgcacaagggctgagaattgttaagaatgccttcctc
aggggtctgcaggatgtcttccctatcgaggtgctctacagaagatggaagaatacagat
ggacagctttcgtggatccaacaagccttatccaatccagatgtcttctgttttgctgac
tatccttgccacacagtagttacagatatattgaaagcgccacctgaagacgacaaccga
gaaatagccacatggaaatctttggatcttgtggagaccctcctgactcttgctgaggtc
ggcaagtacgagcaggtcaagaatttgtttggattccccatcaaacactgccctgacatg
ttattacttgctatgcttcaagtacagccaacgtggactccattgcgacatgaattgatt
tccaccctgatgcctatcttcttgggtaaccatcctaattctggaattgtgctacactat
gcatggcatggacaggggcaatctccaactatccgacaaattgtgatgcactcgatggcg
gaatggtacatgcgtggtgagaacgaccagacgcggctgtcgcgcatactggacgttgct
caggacctcaaggcactgtcgctgcttctcaacgccacaccgtttgccttcgtcattgat
ttggcttgcttggcgtcgaggagggagtatctgaaattagacaagtggatgacggacaaa
atcagggaacacggagaaccatttgtgcagacctgtgtgagtttcctcaagaggcgagct
cctcaggtaatgggaggcatgcctcctgaacctaaggagcttcctggaggaggaaaaaca
ggggtactaccaccggaaactatcggcaccatgctggcatgcttacaggcttgtgcaagc
tctgttgcacctgatctggctgagacaatcatgacaatggtcgccaactgttccaacctg
cttaagtccagaccacctccaggcgtcatcaaacccaatgtaggcctatcatccttgtca
ccggcaggactcaacacaggacagatcgatcctcttacaggcatggcgggtattactacc
ccaaccaccccaaccaatccaggtttgcacggattcccatcgaatccactcggcaacttt
ggcatgagccaggctcagcagcagcagcagcagaagccgttcacaccactgggtgcaccg
ggactgggaggactgacaggaagtgtgccgagtaatccgcacgtaatgcctggcatgagg
aacgacccattcagtcgcccaccagtcagcgccgcaaccaacaacagtccatttggcaat
ccaacccagccacccatcaatccaccaaacaagaacaatggtccgggtccgccaggagct
cctggaccacccggtccgccgggtacaccaggcgtagtgaaaccacagaacaagatgggc
caagatttgggaggcgtcccaccgttcatcaatctgcctaatatggacaactcgttgaag
ccgcctggggcacctggtccttcgggcctccaggaacacctggtgcaggtaagccagtat
ccatctcatatagccaatgatgaatattccgatatatccaacatctggcctgagctaggg
cagacgttcccagcggagatagacgacgaggccaatagctacttccaacagatctataat
caaccacccaatccagtcatgtcagtggatgaggtactgcagatgctgaaaagattcaag
gattcacaagccaagaaggagcaggaggtgttcaagtgtatgctgaggaatctgtttgag
gagtataaattcttcccacaatatcctgagagagaacttcacatcactgcttgcttgttt
ggaggcatcattgagcagggactcgtaacatacatggctttaggaattgcactgcgttac
gtcctggaggcgctgcgcaaaccgcacggtagcaagatgtactatttcggcatcgccgcg
ctggacaaattcaagaatcgtctcaaggattacccgcagtattgccagcatctcgcttcc
attccacattttgcacagtttcctgaagccctaattgagcatgtgcggtatggtatgatg
tcaccacatcagatactagccactacggcacctgctacaccgacaacacctgactccaat
gctgccaatgctttcatccaatttggcatgatgtctcgtgagcctccagcaaggcagact
tccacaacgacggcaacgactactcctgccactgtgacgactccagcaccagcgactatt
tcagcaccaccaaagacgcccacgaccacaagtacaacggcagctgctgctgtgggtacc
aaacctgccgcgaagacaacctctgctgcaccatctatagcaaacaccaccaacattgac
accttactagtagcaacacctaaagacctggagtgtccagagccaccggaagaggtgcaa
gataaagtagccttcttgttcaacaatctctctcagtctaatcttacacaaaagtgtgag
gagttagtagaagttttaaaagaagagtactacgactggatctcccagtacctggtgatg
aagagagctagtattgagatgaacttccatccgctctatgccaactttatagaccagctc
aagatatcgccgctgggtgaaatgtgcatcaaggaaaccctcaggaacattcaggttttg
cttcactcagacaagagtgactccaacttttcagacagaacactcctgaagaatctagga
cactggttgggcatgttgacattggctaagaacaaaccgattcttcaacttgatttagac
ttgaaagccttactcctagaagcttatcacaaaggccaagcagagcttctctacgtggtg
ccatttgtagccaaaattttggagtgtgtgactcgtagtcgtgtcttcaagccacccaac
ccgtggaccatggccatcatcagtgtgctcgttgaactacatcaagagcctggcctcaaa
ctcaatctcaagtttgaggtggaagtactctgcaagaatcttaatcttgatataaatgag
attcctccagccatctacctaaaagactacgagcaactaccgttcattccccaaagacta
tccggcgccaagaaacccaaagatgattccccacccgctttcgatcccatcccaatacca
cccacaccaccggttccagatgccatcgccgttccagcatcccccatcaccacagcaact
accacggcaacacagggtaccaccacaggagctgcgactatcaccaccacaacgtcatct
tctacagctcctttgccacagttcagcttccatgatttgaatacgacggctctgagtgga
ctagctcaacatgtgtcctttaatgcacagctaccattgttccagacgcatccccaatta
aggagttgtgttagagcagcagttgagagggctgtgcaagagttggttggacctgtagtt
gacaggtccattaaaattgcacttacaacatgcgagcagattgttagaaaggattttgcc
ctagacccagaggagactcgtatgcgtatggcagcccatcatatggtgcgcaatctgact
gctggtatggctatgattacatgcagggaaccgttagtgcttagtattagtaacaacttt
aagacaacatgcatgactgctgtcaagggtgttagtcagcagcagaaagagctaatagag
caggcagcaggagtagtagccacagataatgtggagttggcttgttgcttcattcaaaag
tgtgctgtagagaaagctataccagagatggacagaagactagcaactgaaatagaattg
cgtaaacatgcccgcaatgaaaaccgtagatattgtgatccagtagtactgacataccag
gctgagagaatgccagaacaaataaggcttaaggtgggtggggtgccagcaggacagata
gctgtatacgaggagtttgctcgcagtatccctggcttccaacccacccccgaagccaat
caacccccagggttcctggctaagccgatgcagtcgtacgccaccgatgagatcacccag
atatacgacaagtgcgtgcaggagattgagcagcatctgcacgccctgatgcaggctgga
gctagcagtcaacatatccaagtattacagatgcttcttgaggcggtggtattggcgagg
aattctagggagattgtcactgctctggcgttactacaaaagtctgttgaaggtttgttg
gaaggctacactccaacagccatggagccagagttggcattgcgctacagggattgtcat
gtattggtgctaaaatcactgcaggaccaaagagcctatggaccacagtggacaaacaaa
caagttacaagagttgtatttgagagtcgcggtgagcagaggtacaatttagatgcaata
gagcagatgctgcgagggcacctgctgaacctgcaagctgttgatatgcaaattgcacag
tccatggagaatgggctcaactacacagcagtagcattcgccatgaatgttgtgagacgg
tttcttatcgacgacaaacaaagcaacatcctgaatgaagcggacctgtacaacactctt
cacatcttggcacgtattgccaaccagtctccaaacccacctgaaggtttaccacatcta
atcgagcttgtgagacaaaaccacgacccagcattcctagacaaagcccccggtggccct
acatcgatgatgcactctggcatctcgcaagcacgcgagtttgacgatccgccaggtttg
cgagagaagacggagtaccttctgagggagtgggtcaacatgttccactcgcctgctggg
ggtaaagatagtaccaaagctttctctgcctttgttaatcaaatgcaccagcagggcatt
ttaaagacggacgacctcatcacccgtttcttccgcatttgcaccgagctttgcgtggat
ctgtgctacagggctctatcagaggctgctcacacgccgactctaacaagagcaaagtgt
ttccatactctagatgcctttgtacgtctcattgctctgcttgtcaagcactctggggat
gcggctaatgccgtcactaaaattaatctattgaacaaggtgctaggtattgtagcaggt
gtccttctacaagaccacgaagtgagacacacagaattccagcagctgccgtaccatcgg
atcttcagtatgctgttacatgaactcaatgcaccggagaatatcttagaagcaatcaac
tttcaggttatgactgctttttgcaatgcccttcatgtgttgaggccatccaaagcacca
gggtttgtgtattcatggctagagctaatctctcataggatttttatcgcacgtatgttg
gctatgttaccacagcaaaagggatggccaatgtatgctcaactgctaatagatttgttc
aagttcctagcaccattcctacgtaatgctgagcttcctaagcacacagcattactctat
aagggatgcttaagagtactcttagtcctactccacgacttcccagagttcctctgcgat
tatcactacggcttctgcgacgtgatgccgccaaactgtattcagatgcggaatctgatc
ctcagcgcattcccacgtaacatgagattaccggatcctttcacgccaaacctgaaggtg
gacatgctggcggatatcacacagcctccacggatattgacaaactttgctgcaatgata
caaccagcctcatttaagaaggatctggactcctacatcaagacacgtagccctgttacc
tttctgtcagaacttcgaggtcatctccaagtctcacaggaacctggtcagagatataac
atcccgcttatgaatgctttggtgctttacgtaggatctcaggcaatagcgtatatccac
agcaaaggaagtacgccctctatgagtactattacgcactcgtcacacatggacatcttc
cagaatttagtcngagatctggatacagaagggaggtacctgtttttgaatgcaatagcc
aaccagttaagatatcccaatagtcatactcattacttcagctgtactctgctctatcta
tttgccgaggctaatacagaggctatgcaggaacaaatcaccagggtattattggagcgt
ctgattgtcaatagaccgcacccatggggcttactaataacattcattgaactcatcagg
aatcacaacttcaagttctggaaccatgagtttgtgcattgtgctcccgaaattgaaaag
ttgtttgaatcagtcgccaggagctgtatgcagcaaaaaggatcaagcggccagactata
ccactggaaggagaagcgcatgaataa
DBGET
integrated database retrieval system
