Acidaminococcus fermentans: Acfer_0343
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Entry
Acfer_0343 CDS
T01151
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Acfer_0343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afn03021
]
Acfer_0343
03400 DNA repair and recombination proteins [BR:
afn03400
]
Acfer_0343
Enzymes [BR:
afn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Acfer_0343
Transcription machinery [BR:
afn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Acfer_0343
DNA repair and recombination proteins [BR:
afn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Acfer_0343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
ADB46749
UniProt:
D2RNX3
LinkDB
All DBs
Position
398086..401820
Genome browser
AA seq
1244 aa
AA seq
DB search
MFKPVHNGDRIRYSYARIKEVLKMPHLIDLQRKSYEWFIREGLHDVFKDVSPIKDFTDNL
ELSFENFTIGDPKYDIETCKEKDATYAAPLNVDVRLLYKDTGEIKESTVFMGDFPLMTDT
GTFVINGAERVIVSQLVRSPGVYYAKDMDPMGKFLYGTTVIPNRGAWIEYETDLNDIIYA
RVDRTRKLPATALLRVMGLPTNDDIIQTFGEHPFLMATLAKDTTKNEEDALLEIYRKLRP
GEPANLENAAQLIKNIFSDNRRYDLANVGRYKVNKKLGWRQRLLGKELTSPIAFENPDGT
RGEVVLPAGTIIGDEEIDKIEQSGIYSQPGYAEVWVKYQEKPEQMIVTKDIDSSVRVITP
ADVIASFAYLLNVIDGMEGKDDIDHLGNRRVRCVGELLQNQFRIGLSRMERVIRERMTLQ
DADVITPQALINIRPVVAAVKEFFGSSQLSQFMDQNNPLAELTHKRRLSALGPGGLSRER
AGYEVRDVHVSHYGRMCPIETPEGPNIGLIGSLAAYGVVNRYGFIETPYRKVDKKTGKVT
NEIVYMTADEEDNYIVAQANEPLNDDGTFVNSHVTCRERNDVLSIPPSRVDFMDVSPKQV
MSIAAALIPFLENDDANRALMGANMQRQAVPLLNPKAPVVGTGMEYKVAVDSGVCILAKH
AGTVKYVSGDKIIVTRADGAGIDEYNVLKFKRSNQSTCVNQRPIVFKGDKVEEGQVLADG
PATDHGELALGRNAIAAYMPWEGYNYEDAVLLSEDLVKEDVFTSIHIEEYNCDARDTKLG
PEEITRDIPNVSEEALKDLDEDGIIRIGAEVRPGDILVGKVTPKGETELSAEERLIRAIF
AEKAREVRDSSLRVPHGESGIIVSVQIFTRENGDELPPGVSKQVRVHIVQKRKISEGDKM
AGRHGNKGVVSRIMPREDMPFLPNGEPVQIVLNPLGVPSRMNIGQILEAHLGWAACALGM
RIESGDPKLAGELKEAGYDVDKYGMPETVDHAVPVAVPVFDSAREDDMEKTLQLAGVDPS
GKTTLYDGRTGEPFDNPVTVGCIYYLKLHHLVADKIHARSTGPYSLVTQQPLGGKAQFGG
QRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKAYEAIVKGENIPEPGVPESFKVLV
KEMQSIGLDIQVLDEDDDEIDLDDEDEDIGMGDIARELDMDMANKAPHTAANVGEEHPEQ
NSGEELSPDEDQPEGSDFDVIADIGNMSLDDSHDDGDDNGSDAE
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagccggtacataatggcgaccgcatccggtacagttatgctcggatcaaagaa
gtcctgaagatgcctcatttgatcgacctgcagagaaaatcttatgagtggttcataaga
gaaggactgcacgacgttttcaaagacgtttctcccatcaaggattttacggacaacctg
gaactgagttttgaaaacttcaccatcggggatcccaaatacgatatcgagacctgcaag
gaaaaggacgccacctatgcggctcctttgaatgtggacgtccgtctgctgtacaaagat
acgggcgaaatcaaggaatccaccgtattcatgggggacttccccctgatgaccgatacc
ggtaccttcgtgatcaacggggcggaacgggtcatcgtcagccagctggtccgttctccc
ggtgtgtattatgccaaagacatggatcccatggggaaatttctctacgggaccacggtc
atccccaaccggggtgcctggatcgaatatgaaaccgatctgaacgacatcatctatgcc
cgtgtggaccggacccggaaactgccggcaacggcattgctccgtgtcatggggctgccc
accaacgatgacatcatccagaccttcggggaacatcctttcctgatggctaccctggcc
aaggataccaccaagaacgaagaagatgccctgctggaaatctaccggaaactccgtccg
ggcgaaccggccaacctggaaaacgccgcccagctgatcaagaacatcttctccgacaac
cggcggtatgacctggccaatgtgggccggtacaaggtcaacaagaaactgggctggcgc
cagcgcctgctgggcaaagaactgacttctcccattgccttcgaaaatcccgacggcacc
cggggcgaagtggtcctgccggccggcaccatcatcggtgatgaagaaatcgacaaaatt
gaacaaagcggcatctacagccagcccggctatgcggaagtctgggtgaaatatcaggaa
aaaccggaacagatgatcgtgaccaaggacatcgattcttccgtccgggtgatcacccct
gctgacgtaatcgcttcctttgcttacctgctgaacgtaatcgacggcatggaaggcaag
gacgatatcgaccacctgggcaaccggcgtgtccgctgcgtaggggaactgctccagaac
cagttccggatcggtctgagccgtatggaacgggtgatccgggaacggatgaccctccag
gatgccgatgtgatcacgccccaggctctgatcaacatccgtccggtggtggccgccgtg
aaggaattcttcggcagcagccagctgtcccagttcatggaccagaacaaccctctggct
gaactgacccacaaacgccgtctgtccgctctggggcccggcggtctgtcccgggaaaga
gccggttacgaagtccgtgacgtgcacgtttcccactacggccgtatgtgtcctattgaa
acccctgaaggtccgaacatcggtctgatcgggtctctggccgcctacggggtggtgaac
cggtacggcttcatcgaaactccttaccggaaagtggacaagaagaccggcaaggtcacc
aacgaaatcgtctacatgactgcggacgaagaagacaactacatcgtggcacaggccaac
gaacccctgaacgatgacgggaccttcgtgaactcccacgtaacctgccgggaacggaac
gacgtactgtccattcctcccagccgggtggacttcatggacgtatccccgaaacaggtt
atgtccatcgccgccgctctgattcctttcctggaaaacgacgacgccaaccgggctctg
atgggtgccaacatgcagcggcaggcagtgcctctgctgaaccccaaggctcctgtggtg
gggaccgggatggaatacaaggtggctgtggactccggtgtctgcatcctggccaaacac
gccgggacggtgaaatacgtcagcggcgacaagatcatcgtgacccgtgccgacggtgcc
ggtattgatgaatacaacgtactgaaattcaaacgctccaaccagagcacctgcgtgaac
cagcgtcccatcgtcttcaagggcgacaaggtggaagaaggccaggtactggctgacggt
cctgccaccgatcacggcgaactggccctgggccgcaatgccattgccgcctacatgccc
tgggaaggctacaactatgaagacgccgtactgctcagtgaagacctggtgaaggaagac
gttttcacttccatccatattgaagaatacaactgcgacgcccgggataccaaactgggg
cctgaagaaatcacccgggatatccccaacgtttcggaagaagccctgaaggacctggat
gaagacgggatcatccgcatcggtgcggaagtccgtcccggggacatcctggtagggaaa
gtcacccccaaaggggaaacggaactgagcgcggaagaacggctgatccgggccatcttt
gccgaaaaggcacgggaagtccgggacagctccctgcgggtaccccatggggaatccggg
atcatcgtcagcgtacagatcttcacccgtgaaaacggcgacgaactgccccctggcgta
agcaaacaggtccgtgtccacattgtccagaaacggaagatcagcgaaggggacaagatg
gcaggccgtcacgggaacaagggtgtcgtttcccggatcatgccccgggaagacatgcct
ttcctgcccaacggcgaaccggtccagatcgtactgaaccctctgggcgtaccttcccgt
atgaacatcgggcagatcctggaagcccatctgggctgggctgcctgtgcactgggcatg
cggatcgaatccggagacccgaaactggccggcgaactgaaggaagccggttacgatgtg
gataaatacggcatgccggaaaccgttgatcatgcggttcctgtggctgtgcccgtgttc
gattccgcacgggaagacgatatggaaaagaccctgcagctggccggtgtggatcccagc
gggaagaccactctgtacgacggccgtaccggggaacccttcgacaacccggttaccgta
ggctgcatctactacctgaagctccaccatctggttgctgataagatccatgcccgttcc
accggtccgtactccctggttacccagcagcctctgggtggtaaagcccagttcggcgga
cagagattcggggaaatggaagtgtgggccctggaagcatacggggctgcctacaccctg
caggaaatcctcaccgtgaagtccgatgacgtggtgggccgtgtgaaggcttacgaagcc
atcgtgaagggcgaaaacatccctgaaccgggtgtgcctgaatccttcaaggtgctggtg
aaagaaatgcagagcatcggtctggacatccaggtgctggatgaagacgatgatgaaatc
gatctggacgatgaagacgaagatatcggaatgggcgacatcgccagagagctggatatg
gacatggccaacaaggctccccataccgcagccaatgtgggcgaagaacacccggaacaa
aacagcggtgaagaactgagcccggatgaagaccagccggaaggcagcgacttcgacgtg
attgccgatatcgggaacatgagtctggatgattcccatgatgatggcgatgacaacggg
tctgatgcagagtag
DBGET
integrated database retrieval system
