Acidaminococcus fermentans: Acfer_1781
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Entry
Acfer_1781 CDS
T01151
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
afn
Acidaminococcus fermentans
Pathway
afn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Acfer_1781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afn03021
]
Acfer_1781
Transcription machinery [BR:
afn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Acfer_1781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ADB48135
UniProt:
D2RM33
LinkDB
All DBs
Position
complement(1975098..1976867)
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AA seq
589 aa
AA seq
DB search
MTEKEKKELEPQLTANAAEKGQSEAQPTAVGKAKAAPRKKKAAKTTGKAGSGTKTRSKAG
KKDKPKTAAEYLAEFEALAKKNHGVLTYKEIQDRLQNEDTVSVDEMDAIYSKLAEKNIEV
VDDGAEDEEPETIDEDELKVDESELANLSVPEGVIVDDPVRMYLKEIGRVPLLAGDDEIK
LAKRADKGNQAKAILKGEKPEGEFPPVNKRLSIGKLLEEANELLTQEGIWVDKRSVSLAY
RKAQTLTGPDHVLDAEAYQEMVSDFTMDEKKRLNRLLQENKYKIAHGQKHAQEASEKEEG
SSLGTLQELFAVVEDKAAHQKVDEETQKQIEEGKKRFNRLLHRMEFCGDNAKKCLSEANL
RLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGFKFSTYATWWIRQAITRAIA
DQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEEIAKEMDVSVERVREIQKIAQEP
VSLETPIGEEEDSHLGDFIEDQEAPSPADAASYTLLQEQLGKVLQEHLSARERRVLELRF
GLMDGRTRTLEEVGQYFGVTRERIRQIEAKALRKLRSPKRSKPLKEFLE
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaaagaaaagaaagaattggagccgcagctgactgccaacgcagcagagaaa
ggacagagtgaggcccaacccacggcagtgggaaaagccaaggctgctcccagaaagaag
aaggcggcaaaaaccacgggaaaggcgggttcaggaacgaaaaccagaagcaaggcaggc
aaaaaagacaaacccaaaaccgcggcggaatacctggcggaattcgaagcgctggccaaa
aagaatcacggcgttctcacctataaggaaatccaggaccggctgcagaacgaagacact
gtctccgtagatgagatggatgccatctattccaaactggcagaaaaaaacattgaagtg
gtggatgacggagccgaagacgaggaaccggaaaccatcgatgaagacgagctgaaagtg
gacgaatcggaactggccaatctgtccgttccggaaggggtcattgtggatgacccggtc
cgcatgtatctgaaagaaatcggccgggtgcctctgctggccggggatgacgaaatcaaa
ctggccaaacgggccgacaagggcaaccaggccaaagccatcctgaaaggggaaaagccg
gaaggggagttcccgccggtgaacaagcggctgtccatcgggaaactcctggaagaagcc
aatgaactgctgacccaggaaggcatctgggtggacaaacggagcgtctccctggcgtac
cggaaggcccagaccctgaccggtccggatcatgtactggatgcggaagcgtatcaggaa
atggtcagcgactttaccatggatgaaaagaagcggctgaaccggctgcttcaggaaaac
aagtacaagatcgcccatgggcagaagcatgcccaggaagcatccgaaaaggaagaaggc
agcagcctggggaccctccaggaactgttcgccgtcgtcgaggacaaggcggcccaccag
aaggtggatgaggagacccagaagcagatcgaagaagggaagaaacggttcaaccggctt
ctccatcggatggaattctgcggggacaacgccaagaaatgcctgtccgaagccaacctc
cggctggtggtcagcattgccaaacggtatgtgggccgtggcatgctgttcctggatctg
atccaggaagggaacctggggctgatcaaggccgtcgaaaagttcgactacaacaagggc
ttcaaattcagtacctatgccacctggtggatccggcaggccattacccgtgccattgcc
gaccaggcccggaccatccggatcccggtgcatatggtggaaaccatcaacaagctggtc
cgggtgtcccggcagctgctccaggaactgggacgggaaccgactccggaagaaatcgcc
aaggaaatggatgtgtctgtggaacgggtccgggagatccagaaaatcgcccaggaaccg
gtttccctggaaactcctatcggggaagaagaagattcccatctgggagacttcatcgaa
gaccaggaagccccgtctccggcggatgccgcttcctacaccctgctccaggaacagctg
ggcaaggtgctccaggaacatctcagcgcccgggaacggagagtgctggaactgcggttc
ggcctgatggacggccgtacccgtaccctggaagaagtgggccagtatttcggagtcacc
cgggaacggatccggcagatcgaagccaaggccctgcggaaactgcggagccccaagcgg
agcaaacccctgaaggaattcctggaataa
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