Acidimicrobium ferrooxidans: Afer_0391
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Entry
Afer_0391 CDS
T00956
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
afo
Acidimicrobium ferrooxidans
Pathway
afo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Afer_0391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afo03021
]
Afer_0391
03400 DNA repair and recombination proteins [BR:
afo03400
]
Afer_0391
Enzymes [BR:
afo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Afer_0391
Transcription machinery [BR:
afo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Afer_0391
DNA repair and recombination proteins [BR:
afo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Afer_0391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
AftA_C
Motif
Other DBs
NCBI-ProteinID:
ACU53359
UniProt:
C7M2W5
LinkDB
All DBs
Position
399848..403393
Genome browser
AA seq
1181 aa
AA seq
DB search
MITRHRPPERFSFASARNVLPLPDLIAVQRDSFRWFLNEGLAEAFRDISPIEDYSGQLAL
ELEYDPSDPDLAPVPKFSAEECREKDMTYAGPIFVRARFLNRQTYEIKQQIVFMGDFPLM
TDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQHTVVTATINPYRGEWLEFDVEARPGRD
INAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWAKEDHSQTRDDALMEV
FRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSAEIERVEEILGHPLDR
TSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRSVGELIQNQLKIGLSR
LERLVRERMTTQDVEAITPQSLINIRPVVAAIKEFFSTSQLSQFMDQNNPLSGLAHKRRL
SALGPGGLSRERAGFEVRDVHSSHYGRMCPIETPEGPNIGLIGALASYARLNRYGFIETP
YRRVVDGKVTDEVVYLTADEEEDYVIAQANAKLDAEGRFVEPKVLVRRGPQGAVVRVGAM
AVSYGATSEVELATPDEVDLMDVSPAQVVSVSTSLIPFVEHDDANRALMGANMQKQAVPL
LVPEAPFVGTGVEARAGLDAGDVLVAEGPGVVSEVTGASIAVTYDDSVTDDAGRPLGTRR
YWLTKFQRSNQNTCWNQRPTVATGDRVELGDVLADGPATMHGELALGKNLLVAFMPWEGY
NFEDAIIISERLVRDDVLSSLHIEEFETDARDTKLGAEEITRDIPNLSEEALADLDERGI
VRIGAEVGPGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGEYGKVID
VKVFTREDATELPPGVNELVRVYVAQHRKIQVGDKLAGRHGNKGVISRILPIEDMPRLED
GTPVDIILNPLGVPSRMNIGQVLEAHLGYAARWGWEPIGEGAREHRKTRPVTVPARWVAS
PAFDGAHWDESEEAGDLPTIKELLERLNPQSRDGERLVQPDGKAVLYNGRTGERYDNPVM
VGYVYMLKLAHMVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYA
LQELLTIKSDDVVGRVKVYEAIVKGDNIPEPGIPESFKVLIKEMQSLCLNVEVLAPNGER
VQLREFEDEAYSAAEELGINLSRPERNTDYGDDERREERGQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttgatcacgaggcaccgtccgcctgagcgcttcagcttcgcgtccgcgcgcaatgttctg
ccgctgcccgatctgatcgctgtgcagcgcgactcgttccgctggttcttgaatgagggg
ctcgcggaggcctttcgagacatctccccgatcgaggactactccggccagctcgcactc
gaactcgagtacgaccccagcgatcctgatctcgcgccggtcccgaagttctcggcggag
gagtgtcgcgagaaggacatgacctatgccggcccgatcttcgtgcgggctcggttcttg
aaccgccagacctacgagatcaagcagcagatcgtgttcatgggcgacttcccgctcatg
accgaccgaggtacgttcatcatcaacgggaccgagcgtgtcgtggtgagccagctcgtc
cgctcgcccggcgtcttgttccagcccggtcgcgatcagcacaccgtcgtgacggccacc
atcaacccctaccgaggggagtggctcgagttcgacgtcgaggcccggccgggtcgcgat
atcaatgcggggggccgcgtcgcgcgtaagcgccggctgagcctgttcacggtcctgcgg
gcggctgggcttgacgaccctgccgatcttgagcgcctggtcgcacacttcgacttcctc
gaacctcagtgggccaaggaggaccactcccagacccgcgacgacgccctgatggaggtg
ttccgtcgggtacgcccgggcgagccgatcaacgtcgaggcggcccgcctctacttcgag
accgcgttcttccagagccggcgctatgacctcacccgcgtgggtcgctacaagatcgac
aagcgactcagcgcggagatcgagcgcgtcgaggagatcctcggtcacccgctggatcga
acctcggagtcgccgctcgtgctcagccgtgcggacatcatcgcgaccgcgagctacatg
ctgcacctggtcgctggcgagcccgggtatcgcttcgacgatcaggaccacttctccaac
cggcgggtccgcagcgtcggcgagctgatccagaaccagctcaagatcgggctctcccgc
ctcgagcgcctcgtccgtgagcgcatgacgacccaggacgtcgaggcgatcacgccgcag
agcctcatcaacatccgtccggtggtcgctgcgatcaaggaattcttctccaccagccag
ctgagccagttcatggaccagaacaacccgctctctggccttgcccacaagcgccgcctg
tcggcacttggtccaggtggtctgtcgagggagcgagcgggtttcgaagtacgcgacgtc
cactcgtcgcactacggacgcatgtgcccgatcgagacaccggaggggccgaacatcggt
ctcatcggggcgctcgcgagctatgcccgcctgaatcgatacgggttcatcgagacccca
tatcggcgtgtggtggacggcaaggtcaccgatgaggtggtctacctgaccgccgacgag
gaagaagactacgtcatcgcgcaggcgaacgcgaagctcgacgccgagggtcgcttcgtc
gagccgaaggtcctggtgaggcgcggcccgcagggcgcggtcgtgcgggtcggtgccatg
gcggtctcctacggcgccaccagtgaggtcgagctcgccaccccggacgaggtggacctc
atggacgtgagtccggcgcaggtggtctcggtgtcgacgtcgctcatcccgttcgtggag
cacgacgacgccaatcgtgcgctcatgggtgccaacatgcagaagcaggcggtgccgctg
ctcgtccctgaagcgcccttcgtcggtaccggtgtggaagcccgagccggactggacgct
ggcgacgttcttgtcgccgagggcccaggtgtcgtgtcagaggtgaccggcgcctcgatc
gcggtgacctacgacgattccgtgaccgacgatgccggtcggccactcggaacacgtcgc
tactggctgacgaagttccagcgatccaaccagaacacctgctggaaccagcgtccgacg
gtggccaccggggaccgggtcgagctcggtgacgtgctcgccgacggtcccgccaccatg
cacggtgagctcgcgctggggaagaacctcctcgtggccttcatgccgtgggagggctac
aacttcgaggacgccatcatcatctcggagcgcctcgtgcgagacgacgtgctgtcctcg
ctgcacatcgaggagttcgagaccgatgcgcgcgacaccaagctcggtgccgaggagatc
acccgcgacatcccgaacctgtcggaggaggccctcgccgatctcgacgagcgcggcatc
gtccgtatcggagccgaggtcggccccggtgacatcctcgtcggcaaggtgacgccgaag
ggcgagaccgagctcacgccggaggagcgactgctgcgtgcgatcttcggcgagaagtcc
cgcgaggtccgcgacacctcgctgcgcgtgccccacggtgagtacggcaaggtgatcgac
gtcaaggtgtttacccgcgaggacgcgaccgagctgccgcccggcgtgaacgagctggtt
cgggtgtacgttgcgcagcaccgcaagattcaggtcggtgacaagctcgccggtcggcac
gggaacaagggtgtgatctcgcggatcctccccatcgaggacatgcctcgactggaggac
ggtacgccggtcgacatcatcttgaacccgctcggcgttccgagccgcatgaacatcggc
caggtgctcgaggcgcacctcggctatgccgcccggtgggggtgggagcccatcggcgag
ggcgcacgggagcatcgcaagacgcgtccggtgacggtcccggcccggtgggtggcgagt
cccgccttcgacggcgcgcactgggacgagtcggaagaggccggggacctgccgaccatc
aaggaactgctcgagcggctgaacccgcagagccgcgacggcgagcgcctcgtccagccc
gacggcaaggcggtgctctacaacgggcgcaccggcgagcgctacgacaaccccgtcatg
gtgggctacgtctacatgctcaagctggcgcacatggtcgatgacaagatccatgctcgc
tcgacgggcccgtactcgatgatcacgcagcagcccctcggcggcaaggcccagttcggt
gggcagcgcttcggtgagatggaggtgtgggccctcgaggcctacggcgccgcgtacgcg
ctgcaggagctgttgaccatcaagtccgacgacgtcgtaggccgtgtgaaggtctacgag
gccatcgtcaagggtgacaacatcccagaaccggggattccggagagcttcaaggtgctc
atcaaggagatgcagtcgctgtgtctgaacgtggaggtgctcgctccgaacggagagcgg
gtgcagctgcgcgagttcgaggatgaggcgtactcggcggcggaggagctcggtatcaac
ctgagccgccctgagcgcaacacggactacggcgacgacgagcgacgcgaggagaggggt
cagtag
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