Acidithiobacillus ferrooxidans ATCC 23270: AFE_0320
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Entry
AFE_0320 CDS
T00810
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
afr
Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFE_0320 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afr03021
]
AFE_0320 (rpoB)
03400 DNA repair and recombination proteins [BR:
afr03400
]
AFE_0320 (rpoB)
Enzymes [BR:
afr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFE_0320 (rpoB)
Transcription machinery [BR:
afr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFE_0320 (rpoB)
DNA repair and recombination proteins [BR:
afr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFE_0320 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ACK79513
UniProt:
B7J460
LinkDB
All DBs
Position
279980..284068
Genome browser
AA seq
1362 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKSQSILAVPYLLATQMDSYREFLQESVPPAARKETGLEAVFRSV
FPMESYSGNAMLDYVSYRLEKPVFDVVECRQRGLTYCAGLRVRLRLAVMEKDDTTGAKRV
KDVKEQDVYMGELPLMTEHGSFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA
RIIPYRGSWLDFEFDPKDHVYARIDRRRKLPATTLLRALGYSTQDILEMFFDMETFRLID
GDLRYVLIPQRLQGEVAAFDIVSPETGDVLVQAGKRITVRQTKALSEVQGLHEIPVPDSF
LLGKVVARDIVHPETGEVVVQANEPVSGELLDALRKMPSLTLHTLYLNELDRGPYISETL
RIDTSRDAHDAQMEIYRLMRPGEPPTKDAAQNLFQGLFFSPDRYDLSAVGRMKFNRRVGR
DEITGPGVLNDADIIAVLKVLVALRNGVGEIDDIDHLGNRRVRSVGELMENQFRLGLVRV
ERAVKDRLALAESEGLTPQDLINAKPIAAVVNEFFGSSQLSQFMDQTNPLSEVTHKRRVS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSCYARTNSYGFLETPY
RRVVDRRTTDEVEYLSAIEEGNYMIAQANSTVDEHGVLTDELVSCRFKNEFTLANPDQVQ
FMDISPRQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPTVRSDAPMVGTGMERVVAID
SGAAVVARRGGVVDIVDGARIVIRVSDEETLPEEPGVDIYNLVKYARSNQNTTLNQRPVV
KVGDVVSRGDVLADGPSTEMGELALGQNILVAFMPWNGYNFEDSILISERVVAEDRYTTI
HIEEFSVFARDTKLGPEEITRDIPNVAEGALRHLDESGIVVIGAELAPGDILVGKVTPKG
ETQLTPEEKLLRAIFGEKASDVKDNSMRMPAGMYGTVIDVQVFTRDGIEKDARAKSIEEH
ELARIRKDLNDQYRIVEEDSYQRIERQLIGKVAEGGPNGLAAGNKVTKAYLKDLPRAKWF
EIRLRTEESNESLEQIRAQLEEQRQRLDAVLEEKRRKLTQGDDLSPGVLKMVKVHVAIKR
HLQPGDKMAGRHGNKGVVSKIVPVEDMPYLADGTAVDIVLNPLGVPSRMNVGQILETHLG
WAAKGLGKKIGAMLDSEVAMAEMRAFLAEIYNRSGKKEDLDSLTDQEIRELSANLRGGVP
MATPVFDGASEEEIGDMLELAGLPRSGQVTLYDGRSGDAFDRPVTVGYLYMLKLHHLVDD
KMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGR
SKMYESIVKGDFRMDAGMPESFNVLLKELRSLGIDIELEQSK
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggcctactcttttactgaaaagaaacggattcgtaaagactttggcaaaagccagagc
attcttgctgtgccatatctgctggctacgcagatggattcctaccgggagtttctccag
gagtcggtacccccggcggcgcgaaaggaaacgggtttagaagctgttttccgttcggtt
tttccgatggaaagttattccggcaatgcaatgctggattatgtctcctaccgcctggaa
aaaccggtgtttgatgtggtggagtgccgccagcgcgggctgacctactgtgccggtttg
cgggtacgtttgcgtctggcggttatggaaaaagacgacaccactggcgccaaaagagtc
aaagacgtgaaggagcaggacgtctatatgggcgaactgcctctgatgacggagcacggt
tccttcgtgattaacggcacggagcgcgtcatcgtctcgcagttgcatcgttcgccgggc
gttttcttcgatcatgatcgcggcaagacccattcttcgggaaagctcctctttaatgcg
cgcatcattccttaccggggttcttggctggatttcgagtttgaccccaaggatcacgtt
tatgcgcgcatcgatcgccgtcgtaagttgccggcgacgacgttgctgcgtgcgctgggc
tacagcacccaggacattcttgagatgttttttgatatggagacctttcgcctgatcgac
ggcgatctgcgctatgtactgatcccgcagcgtctacagggcgaagtggcggcgtttgat
atcgtcagtccggaaactggcgacgtgctggtacaggccggtaagcgaattacggtgcgc
caaaccaaggcgctctccgaggttcagggtctgcatgagattcctgtgccggatagcttc
cttctgggcaaggtcgtcgcccgggatatcgttcatcccgaaaccggcgaagtggtggta
caggccaatgagcccgtcagcggtgagcttctggacgctctgcgaaaaatgccgtcactc
acactgcatacgctctatctcaacgaactggatcgtgggccttatatttcagaaacgttg
cgtatcgacacgtcacgtgatgctcacgacgcccagatggaaatctatcggctgatgcgt
ccgggtgaaccgccgacgaaggatgcggcgcaaaacctgttccagggactgttcttcagt
cccgatcgctacgacctgtcggccgtaggccgcatgaagttcaatcgtcgggtggggcgc
gatgagatcaccggtcctggcgtgctgaatgatgcggatatcatcgcggtgctcaaggta
ctggtcgccctgcgtaacggtgtgggggagatcgacgatatcgatcatctcggtaatcgg
cgcgtgcgctcggttggtgagttgatggaaaaccaatttcggctcggtctggtgcgtgtg
gaaagggccgtcaaggaccgtcttgccctcgccgagagcgagggcctcacgccccaggat
ctgatcaatgcaaaacccattgcggcagtggtcaatgagttctttggctccagccagctt
tcccagttcatggatcagaccaacccgctttccgaggtcacccacaagcggcgtgtctcg
gctttggggccgggcggcctgacccgggagcgtgcgggtttcgaggtgcgtgacgtacat
ccgacgcactacggccggatctgccccattgaaacgccggaaggcccgaatatcggactg
atcaacagcttgtcgtgctacgcgcggacgaattcctacgggtttctcgaaacgccgtat
cgacgcgttgtcgatcgccgcaccaccgatgaggtggaatacctgtcggctattgaagaa
ggcaattatatgattgcccaggcgaactcgacggtggacgagcacggcgtgctcaccgac
gaactggtgtcctgccgtttcaagaacgagttcactctggcaaacccggatcaggttcag
ttcatggatatctcgccgcggcagatcgtctcggtggcggcgagtatgatcccgttcctg
gagcatgatgacgccaaccgcgccctcatgggttccaacatgcaacgccaggcggtgccg
acggtgcgttccgatgcaccgatggtgggtacgggcatggaacgggtggtcgccatcgat
tctggtgcggccgtcgtcgcccggcgtggtggcgtggtggatatcgttgatggtgcccgt
atcgtcattcgtgtcagtgatgaggaaaccctgccggaagagcccggcgtggatatctac
aacctcgtcaagtacgcgcgttccaaccagaacaccaccctgaatcagcgccccgtggtc
aaggtcggcgatgtggtgagtcgtggtgacgtactggccgacgggccgagcacggagatg
ggtgaactggcgctcggccagaacattctggtcgcctttatgccctggaatggctataac
ttcgaggattccatcctgatctcggaacgggtcgtggcggaagaccgctataccactatt
catatcgaggagttttcggttttcgcccgcgacaccaaactggggccggaagaaatcacc
cgggatatccccaacgtcgccgaaggtgccttacgtcatctggatgagtcgggtattgtc
gtaatcggtgcggaactggcgccgggtgacattcttgtcggcaaggtcacgcccaagggc
gagacgcagttgacgccggaagagaagcttctgcgggcaatcttcggtgaaaaggcctcc
gacgtgaaagataactccatgcgaatgcctgccggtatgtatggcacggtgatcgatgtg
caggtctttacccgcgatggtatcgagaaggatgcccgtgccaagtccattgaagaacat
gaactcgcacggatccgtaaggatcttaatgatcagtatcgcatcgtcgaggaagacagc
tatcagcggattgagcgtcagctgatcggcaaggttgccgagggcggtcccaacggcctg
gcggccggaaacaaggtgacaaaggcttatctgaaagacttaccgcgtgctaaatggttt
gagatccgtttgcgtacggaagagagtaacgagtccctggaacagatccgtgctcagctc
gaggaacaacgccagcgtctcgatgcggtactcgaagaaaagcggcgcaagctgacccag
ggggatgatctgagtccgggcgttctgaagatggttaaagtgcatgtggccataaaaagg
cacttgcagcccggtgataaaatggcaggccgccatgggaataagggcgtggtctccaag
atcgtgccagtggaagacatgccctatcttgccgatggtacggcggtggatatcgtgctc
aatcctctgggtgtgccttcccgtatgaacgtgggacagatcctcgaaacccatctgggg
tgggctgccaaggggctgggcaagaagatcggcgcgatgctggacagtgaggtggcaatg
gcagaaatgcgcgctttcctggcggaaatctacaaccggtctggcaagaaagaggatctc
gacagcctgacagaccaggaaattcgcgagctttccgcgaatcttcgtggtggtgtgccc
atggcgaccccggtctttgatggcgcctccgaagaagagatcggcgacatgctggagctg
gctggtttgccgcgcagcggccaggtcacgctgtatgacggacggagcggtgatgctttt
gaccgcccggtgacggtgggttatctctacatgctcaagctccatcacctggtggatgac
aagatgcatgcccgttccacaggtccgtacagtctggttacccaacagcctttaggtggt
aaggcgcagtttggcggccagcgcttcggtgaaatggaggtgtgggcgttggaagcctat
ggcgcggcatacaccctgcaggaaatgctcaccgtgaagtcggatgacgtaagcgggcgc
agcaagatgtatgagtccatcgtcaagggtgatttccgcatggatgccggaatgccggag
tctttcaacgtgttgttgaaagaactgcgttctttgggtatcgatattgaactggaacag
tccaagtaa
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