Artemia franciscana: 136039232
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Entry
136039232 CDS
T10524
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
afra Artemia franciscana
Pathway
afra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136039232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afra03019
]
136039232
Messenger RNA biogenesis [BR:
afra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136039232
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
136039232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
136039232
NCBI-ProteinID:
XP_065578846
LinkDB
All DBs
Position
19:complement(7001903..7043400)
Genome browser
AA seq
2282 aa
AA seq
DB search
MPLVSDTVSLFLTYTDYLCDERSDSDGKKDLNLEFETPAGVIKVLRKGNTGNEASEKDKV
FVKNLIQAAPSLVKAINFAKPIDQSVIEVPVEFLPECALKMATEGTVFKNPLDGSLSDLV
IEIGYSFTASVEECKAHLRSLSQEMTPSQVSRTLSAMMRTLVGLDSKGLWGADGKEKLPN
DSGQTWNAENFVQALVEICPKLQWEEVVLELDHPGFQVYSRSALVFLTTALNAGLKSKGQ
PIEQVFAQFLYRRWKYSDSQMSLITQVVKNPDIVSLVELPHTPVSTDILKILNDGDNKEL
SQWKSAELLEILLFLAENGQYSAVQELVKVPVQHCPDVLVLGLIQLLSPMTQMRQELIAN
LIPIFLGNHPNGGVILHHAWHAQTASIKSLVIAAMADWYVRGDFDQSRLSRILDVAQDLK
GLSVLLNAQFYAFIIDLACLAARREYLKLDKWITDKIREHGEPFVVALVKSVQRRIPHLT
LNKDEIGAKSSYFPVETLVTILNCLQSCAAQVSQELSETIVSMNTSCNMLLQRARAQQQQ
AAQGLSKPFRGGMDTTWSSSGFGNQFMPSGMIDPAPGLSSGMSNLSIGTSMSSSLGLGGL
GGPTIQNSPAKIFNSGHFSSSSALSQMTPSSTSHFGLGLGMPSLGSSIPSSTIAGGNSLS
ASSVSGFRFSLAPQGSVPDRTRQSDITTGSLFPEASQSVSKDIDAEATSYFQRIYSQAAH
ASLAPLAIEEALEMLKRFQESPVKREREVFSCMLKNLFEEYRFFPQYPEKELNVTAQLFG
GIIEHGLVTYMALGIALRYVLDALRKPPGSKMHFFGTTALERFKGRLKEYPQYCQHLTSI
AHFHEFPSHLADYIEYGTRSMEPPSATQGGLPSANRLATVSTTSAPSVVAKATVSSVVSG
RPSIANATNIDTLLSASERDERDMVLPSETIQDKIGFIFNNLSIVNLPQKCDEFKELISE
DFYLWIAHYLVMKRVSIEFNFHNLYSNFLDTLKIGELHANVVRETFRNIKVLLKSDKSIA
NFSDRTLLKNLGHWLGLLTLGKNKPILLHEIDMKSLIVEAYHRGQQELLYVIPFVAKVVE
ACAKSRVFRIPCPWTIAIMNALAELHQEHELKLNLKFEIEVLCKTLGVDVNDLKPGNILK
DPERLARLEPQLSSPIHRVEGVTPVKARDTPSVQLQAEEESVAAAVSAVATGPSPMTIQN
QAQPATSTATTTPVQGTPVVIPEPRFCYGDINATTSANLAQFITINTNVVLFQANPQLKE
FVKPAVERAIQEWIQPVIERSLKIALTTCEQIIRKDFALDPEEQRMRICAHSMTRHLVAG
TAMISCREQLLTSMTSSLKNAFMATIRATSIQQREACEQAAAVVAQDNVELACAFIQKTA
IDKALIEIDKRLTGDYDLRRQAKVEGRRYCDPVLLAYHNERMPEEIRLKAGPPSPALAAV
YDEFARYIPGFLPISEREASVMAPKPVAPAPFQTGAFSGASSGAPIPPSGEDLNQLRLIY
QRLALELENLLQVVQNISPASHIQTVASLIEALYYGRLQRDPNSAVNIIQKAVEGLAEVL
TSASQSDPDVVIRLRDAFLFVLKAMQDPQAHGAHWTPRQVTRFYIDLREDLRLNLDVVHC
LLSAHLISLPQFDVYLATLLEGWMNPVASLLTGCIFATQVITFYLVEGNGKVPSGGTLLN
ENDLPNSIDMLIRVATQTRQPNEAVITLVEHLKSMQDPEKTGGAPGSSTAMIHSGISQAR
EFDDPPGLDEKTELLLHEWIVMYHSPSGYFPLVKGGRDSGKAFGVFIHQMNLHGILKSDD
IVTRFFRLSTQICVNMCYRVLSEPASSPSIARTKCFHNLDAFARLIALLVKHSGDTANTT
TKVNLLNKVLGIIAGVLLLDHESRAGEFQQLPYHRLFIMLFLELNAPEVVLESMGFQVMQ
AFYNTLHILRPCKAPGFAFAWLEIIAHRVFIGRFLALIQQRGWTMYAQLVIDLFRFMVPF
LRNTELGKPMLTLYRGTLRLLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFPR
SMRLPDPFTPNLKVDRLPEIHQAPRVVANFAAAIQPLSFKNDLDAYLKTRGPVTFLSELR
SVLQVNPDQGLRYNISMINALVLYVGTQAISAIQSKSMTPAMSTIGHSAHMDIFQSLAVN
LDTEGRYLFLNAIANQLRFPNSHTYYFSCALLCLFSEANSEALQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPIFNFWKHEFVHCAPEIEKLFESVARSCMVQKQGQAREVEEDPRS
NE
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atgcccctagtgtcggacactgtttcactttttctgacgtatacagattatttgtgtgat
gaacgatctgatagtgatggtaaaaaagacttgaatttagagtttgaaacaccagcagga
gttatcaaagttttgagaaaaggcaacactgggaacgaggctagtgagaaagataaagtg
tttgtaaagaacttgatacaagcagccccaagtttagtgaaagcaatcaactttgccaaa
cctattgatcaaagtgttatagaagtacctgttgaatttcttcctgaatgtgctttaaaa
atggcaactgaagggacagtgttcaaaaatcctctagacggttctcttagtgatcttgtt
attgaaattggatattcgtttaccgcctcagttgaagaatgcaaagcacacttgaggagc
ttgtcacaggagatgacaccttctcaagtttccagaactttgtcagcaatgatgagaact
ttagttggtcttgacagtaaaggcctatggggagcagacggaaaagaaaagctgccaaat
gactctggccaaacctggaatgcagagaactttgtccaagccctggttgagatatgcccg
aaattacagtgggaagaagttgttcttgagctagaccaccctggctttcaagtatacagt
cggtcagctttggtgtttcttacaactgcattgaatgctggcttgaaaagcaaaggtcag
cctattgagcaagtatttgcccaattcttgtacaggcgatggaagtattcagacagtcaa
atgtcattaattactcaagtggtcaaaaaccctgacattgtgtctcttgttgaattgccc
catacaccagtttctactgatattcttaagatattaaatgatggtgataataaagaactc
agtcagtggaagtcagcagagctgcttgaaattcttcttttcttagctgaaaatgggcaa
tatagtgcagttcaagaattagttaaagttccagtacaacattgtccagatgtgctggtt
ttgggtttgattcaacttttatctcccatgacccaaatgcgacaagaattaattgcaaat
cttattccaatctttctgggtaatcatccaaatggaggagtgatattgcaccatgcatgg
catgcacagactgccagtatcaagtctcttgtgattgcagccatggcagactggtatgta
agaggggattttgatcaatcaaggttatctagaattctagatgttgcacaagatctaaaa
ggactttcagttttgttgaatgcacagttctatgctttcataattgaccttgcttgttta
gcagcgaggcgagaatacttgaagcttgataagtggattactgacaaaattagagagcat
ggtgaaccatttgttgtggctcttgttaaatctgtgcagagaagaatacctcacctaacc
ctgaataaagatgaaattggagccaagtcatcttatttccctgtggagactctagttaca
attttgaactgcctccaatcttgtgctgctcaagtaagccaagagttatcagagacaatt
gtttctatgaatacaagctgtaatatgttgcttcaaagagcaagagcccagcaacaacaa
gcagcacaaggcctgagtaaaccgttcagaggtggcatggatacaacctggagtagttct
ggatttggaaatcaattcatgccaagtggtatgattgatcctgcaccaggcctttcatct
ggcatgagcaatctttctatagggactagtatgtcctcatctctaggtctaggaggcctt
ggaggtcccactatccaaaattccccagctaagatattcaactcaggtcatttcagttct
tcaagtgcacttagccaaatgacgccatcaagtacttcccattttggtcttggcttggga
atgcctagtttaggatcaagcataccatcaagtactatagcaggtggtaactccctttct
gcctcatctgtgtctggttttcgatttagtctggctcctcaaggaagtgtgcctgacaga
acccgacagagtgatattactactggctctttatttccagaagcatctcagtctgtttct
aaggacatagatgctgaagcaactagttattttcagcggatatatagtcaagctgctcat
gccagtttggctccccttgcaattgaagaggcactagaaatgctcaagcgctttcaagaa
tcgccagtaaagcgggagcgtgaagtgttcagctgtatgctgaaaaatctttttgaagaa
tatagattttttccccaatatcctgagaaagaactcaatgtaactgctcaactctttggt
ggtataatcgaacatggcttagtcacctatatggcattaggaatagcccttcgctatgtt
cttgatgcacttagaaaaccccctggatcaaaaatgcacttttttggtacaactgcctta
gagcgtttcaaaggacggctaaaagaataccctcagtactgccaacatctgactagtatt
gcacactttcatgaatttccttcacacttggctgactatattgagtatggaactcggtcc
atggagccaccatctgctacccaagggggtttaccatctgcaaatcgactagcaacagtt
tcaactacatcagccccatctgttgtggctaaagccactgtttcttcagttgtatctggc
cgtccctcaatagcaaatgccacaaatattgatactctattatctgcttcagaacgagac
gaaagagacatggttttacctagtgaaacaattcaagataagatcggatttatttttaat
aatttgtcaattgttaatttgccacagaaatgtgatgaatttaaggagttgatcagtgaa
gatttttacctctggattgcccattatttggttatgaaacgagtctctatcgaattcaac
tttcacaacttgtattcaaatttcttagacacactaaaaataggtgaacttcatgctaat
gttgtcagagaaactttccggaacattaaggtccttttgaaaagtgataaaagcattgcc
aatttttcggatcgaactttgcttaaaaatttaggacattggcttggattactaaccctt
gggaaaaataagcctatactgttgcatgaaattgatatgaagtcactgatagttgaagca
tatcatagaggtcagcaagaacttttgtatgttattccttttgttgccaaagttgttgaa
gcttgtgccaaaagtagagtatttcgtattccctgtccatggactatagctatcatgaat
gctctcgcagagcttcatcaagaacacgaattgaaactaaacctcaaatttgaaattgaa
gttctttgtaagacgttgggagttgatgttaatgacctaaagcctggcaatattttaaaa
gatccagaaagattagccagattagagccacagctatcatctccaatccatagagttgaa
ggggtaactcctgtcaaagcccgtgatacgccttctgtacagttacaagctgaagaagaa
agcgttgctgctgcagtttctgctgttgctactggcccctccccaatgacaatacagaat
caggctcagccggctacaagtactgccacaactacacctgtccaaggtactccagtagta
ataccagaacctcgtttttgctatggagatatcaatgcaacaacttcagctaatttggcg
cagtttataactatcaacaccaatgttgtgctgtttcaagctaatccgcagcttaaagaa
tttgttaaacctgctgtcgaaagagccattcaagaatggatacaacctgttattgagagg
tcacttaagattgctctaactacgtgtgagcaaataattcgaaaggactttgctcttgat
ccagaagaacaaaggatgagaatatgtgctcattcaatgactcgtcacctagtggctggt
actgccatgatatcatgccgtgaacagctattgacttcaatgacaagcagtttgaaaaac
gcattcatggcaactatccgtgcaacatctattcaacagcgtgaagcttgcgaacaagct
gcagcggttgtcgcacaagataatgtagagcttgcatgtgcatttatccagaaaactgct
atcgataaggccttgatagaaatagacaaacgactaactggtgattatgatctacgacga
caggccaaggttgaaggtaggcgctattgtgacccagtacttttggcgtatcacaatgaa
agaatgcctgaagagataagactcaaggccggtccaccatcacctgcgctagctgctgtt
tacgatgaatttgcaagatatatcccagggttcctgccaatatctgaaagagaagcttct
gtcatggcacccaagcctgttgctccggctccatttcaaacaggtgctttctctggtgca
tcgagtggggctccaattcccccatctggcgaggatttgaaccaactaaggcttatctac
caacgactagcacttgagctggagaacttgcttcaagttgttcaaaatattagtcctgcc
tctcacattcaaactgttgctagtcttattgaagccttgtattatggtcggctccaaaga
gacccaaattctgcagtgaatattattcagaaagctgttgaagggttggctgaagtgtta
acatcagcatcccaatcagatccggatgttgttattcgactgcgagatgcatttttattt
gtgcttaaggcgatgcaggatccacaagctcatggagcgcattggactccaagacaggtg
actcgcttttatattgaccttcgtgaagatctacggctcaaccttgacgttgttcactgt
ttgctctctgcccatcttataagcctaccccaatttgatgtatatttggcaacattgctt
gaaggatggatgaatccagttgcatcccttctaactggttgcatttttgcaacacaagtg
atcactttttatctcgtcgaaggcaatggtaaagtgcctagcggtggaactctgctaaat
gaaaatgacttacctaattcaattgatatgttgattcgcgtcgctacgcagacccgacag
cccaatgaagcagtaattactttggttgaacatttgaaatcgatgcaagatccggaaaaa
acgggtggtgctccgggttcttcgacggctatgatccattctgggatttctcaggcaaga
gaatttgatgatccacctggattggacgaaaaaacagagctattgcttcatgaatggatt
gttatgtatcactcgccatctggatattttcctcttgttaaaggtggaagagattctggc
aaagcatttggtgtattcatccatcagatgaacctacatggaattttgaagagtgatgat
attgtaacaagattctttagattgagcacccaaatttgtgtgaatatgtgttaccgcgtc
ctttcagagccagcaagttctccatccattgcgcgcacaaagtgtttccacaatttggat
gcttttgcaagacttatagcacttttggtgaaacactccggtgacacagccaatacgaca
actaaggtgaatctgctaaataaagttcttggtatcattgctggcgttcttcttctagat
catgaaagtagggctggagaatttcaacagcttccataccaccgtctttttataatgctg
tttttggaattgaatgccccagaagttgttcttgaaagcatgggcttccaggttatgcaa
gctttctacaacacactccatattcttcgaccatgtaaagcacctggatttgcatttgcc
tggctcgaaatcattgcccatcgtgttttcatcggaagattcttggcattgatccaacag
cgtggttggacaatgtatgcacaattggttatagacctgtttagattcatggtcccattt
ttgaggaatactgaactagggaaaccgatgttgactttgtacagaggaacactgcgatta
ttacttgtgctgctccatgattttcctgaatttttatgtgattatcattatggattttgt
gatgtgataccacccaattgtattcagatgcgtaatttgatactgtctgctttcccaaga
agtatgcgattacctgacccatttacccccaatctcaaagtagataggctgccggagatt
catcaggcacctagagtcgttgcgaatttcgctgcagccatccaacctctctcctttaaa
aacgatttggatgcttatttgaaaacaagaggacctgtaacattcttatcagagctacgt
agcgtactccaagtaaaccctgatcaaggattgcgttataacatatccatgattaatgcg
cttgtgttgtacgtgggcacgcaggcaatcagtgcaattcagtcaaagagtatgacccct
gctatgtcaacaattggacactctgcccatatggatatttttcaatctcttgctgtaaac
ttagatactgaaggacggtatttattcttaaatgctatagcaaatcagctccgatttcca
aatagtcatacttactactttagctgtgcactgctgtgtctcttctcagaggctaatagt
gaggctcttcaggagcaaattacccgtgttcttttagagcgattgatcgttaaccgacct
catccgtggggtttgttgattacttttattgaattgattaaaaacccaattttcaatttt
tggaagcatgaatttgttcactgtgctccagaaattgagaaactcttcgaatcagttgcc
cgctcgtgtatggttcaaaaacaaggtcaagcaagggaggtggaggaagacccgcgtagt
aatgagtga
DBGET
integrated database retrieval system
