Anopheles funestus (African malaria mosquito): 125760839
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Entry
125760839 CDS
T09273
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
afun
Anopheles funestus (African malaria mosquito)
Pathway
afun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125760839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afun03019
]
125760839
Messenger RNA biogenesis [BR:
afun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125760839
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125760839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
CNOT1_HEAT
DUF3819
CNOT1_1st
BEN
Motif
Other DBs
NCBI-GeneID:
125760839
NCBI-ProteinID:
XP_049277319
LinkDB
All DBs
Position
2:64714498..64725592
Genome browser
AA seq
2472 aa
AA seq
DB search
MNQEPFTYALSQISHLVSNVNKKNTAATVRQLAQLVKDFGLEADRHLLRCLFSSIDFGDA
THSASRGFCQARLLATELASLTNKPQLVANICFAVDNPFPQQKSLKPTANLLTQISKTLS
CTPIQETALSIALLNSEHPETIRLAEAHLKICLRGLIENYVESDPGSNVEGNLNDVSPEF
LQQILSLISYGKHTTYGLSDQTYERFRNQLCRDFPRDRVPLILAPLLYSENSEISAEILK
INTHSILQSSIMKTSWTNLVVEVGYSFTATLDDCRNHLLKVGGREITPQDVAKIVSSMCL
THETLSESNINLPTPSAFWPQGNDPSGQKGKDGNGGSSASENTTWKPEVLVQALKEVVPN
LNWKDVCLALDHPEFMLKDRAGLSLLLTIVKMGMQSSNMGQNFPVECLYQRWTNVEGQLS
IISQILKYQDLYSFADHIYTSVSLELLKTPPETDNKEVASWMSLHLVDVLLYIADHANLS
DKVMKIFKIPGAVCPDILFLALLQINPPMTTARQDLFTNLVPIFLGNHPNSGTILHHAWN
HSTFNVTLRPIILHAMSDWYMVGEGDQSRLSRILDVAQDLKALSNLLNIRSYMFIIDLAC
LASRREYLKLEKWLADKIREHGEAFVKTILKFLQRRCPQIMGAKYNEEQIPKSAQLPPET
LSTILNCLQACMGNCTPEVSEMIHSMTQYGMMLNSKTRVQQQQQQQQQQAPQQQPPPPGV
LRPHRGLEAFGPNAMGSQLLPPMVESLNSLSANIGGLSIGGPGGGNSAFSFNNIIATPGS
PSRLHPSSSPFPMMPLPPGAAAAAAAQAGTLGRLQQTPNDKLGAGGGGGLQNAAITQSPF
QTEATAQPVSKEVEDEANSYFQRIYNLPPHPTLSIDEVLDMLQRYKDSPNRHENDVFQCM
LRNLFEEYKFFPQYPDKELQTTAQLFGGMVERNLVTTYVALGLALRCVLDALKKPEGSKM
YYFGITALDRFKNKLHLYPKYCEYVRSIPHFSEFPPHLIEYIDYGVQGHDPPNKTLGPGP
LPPPILQFIPSGAAGRGPVGNPLYRSNSVTGTSNLTLAGVSTAASAVAAAAAATAAAGTG
SSAGTPGKMNLAAQLVAPGGSGGGAGVAGSSGSGAGSSTGGGQPPRVKSIANATNIDTLL
VATQDREEKIIAPPDAIQDKTAFIFNNLSQINLQQKCEEIKEILQKDYYTWLAQYLVMKR
ASIEVNFHVLYSNFLDALKIAEINKLVTKETFRNIRVLLRSDKGIANFSDRSLLKNLGHW
LGMMTLGRNKPILHLDIDVKSLLVEAYNKGQQELLYVVPFVAKVLESCAKSKVFKPPNPW
TMSIMNILAELHQEPELKLNLKFEIEVLCKNLNIDVSDLKPAIYLKDPERAQNIEYQLSQ
PKPPKEAPTIMPGAGVAGIGVGGGGGAGSGVVAVVSQLPPGSDEMGSSGPSSSPANVAMD
PALAATGPPEPRFHYSDINIANPSYIAQHILYHPTITILHTQSHLKVIVKNSLERTITEW
ITLIVDRSVKIASKTTEQIIRKDFALDSDETRMRRAAHNMARSLVAGMAMITCRDQMLQS
IQNNIKTGFLTALSHAQKDSIEGAATQLAVDNIELVSAFIQKAAIEKVALEMEKILAEDF
QLRKIARQEGRRYWDASVLSYQTDRMPERIRLNVGGVSPSQLAVYEEFSRNIPGFLPITE
RDVAQFAPKISELLPFVATPDEIGAMYDELASKMDAFIKATRIIPMLQLHTNNMEQLLEC
LIHAHRSLDNLTGCTLLNKAVEGLLEGLVNIPDQLEHIKLYRDIHLRVMRLMQDNRLFGP
LWTNKAITRYMLECREELRYNVEAIDLLISSNFVNMQQFDIMLVQLMDNGNNYVAVVFAM
QLLQTFFIDERHNSSITENELGSTIEMLHRLTAHPRAPEGLTHLIEMLRANHDPNSFLMD
RAVVGPTSYIHAGLAQARSDIDDSPGFLERAEFLLKDWVTIALSPNSCRDPLKGFSVFVG
KMNAHGILKGDEPLTRFFRFATQYCIDLTYRNMNEPNAKAKIFQFIDAYVRLIALLVKHS
GESGNTNTKLNLLNKILGIVVGILLHDQEVHATAFQQVGYHRIFAMLFLELTTQDPILEN
ISISVITAFCHTYHILRPSAAPGFCYSWLELIAHRVFIGRILALIPQQKGWHMYSQLLID
LFKYLAPFLRNAELAKPVQHLYKGTLRVLLVLLHDFPEFLCDYHFAFCDVIPSNCIQMRN
LILSPYPRNMRLPDPFTPNLKVDMLNDIGGSPRISINYVSSIQPASFKKDLDSYLKARAP
VTFLSELRSNLQISNEVGSRYNIPLMNALVLYVGTQAIAHIRSKNLGPTMSTIIHSAHMD
IFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCCILYLFAEANSEAIQEQITRVLL
ERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHCAPEIERLFESVAKSCMVTSKSQQQ
IQNVESDITECN
NT seq
7419 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagagcctttcacatacgccttatcgcagatcagtcacttagtgtcgaacgtg
aacaagaagaacaccgcggccacagttcgtcagctagcgcagttagtgaaggacttcgga
ctagaagccgatcgtcacttgctgcgttgtttattctcgtcgattgactttggggacgcc
acacattccgcttccagaggtttttgccaggctcgcttactggccactgaactcgcgagc
ctgacaaacaaaccgcagctggtagccaacatttgcttcgccgtcgacaatccgttcccg
cagcaaaagtccctgaagccaacggcgaacctgctgacacagatctcgaaaacactttct
tgcaccccgatccaggaaacagcgctttcgattgctcttttgaattcggaacaccctgaa
acaatacggctcgcggaagcgcatcttaaaatctgcctgagagggcttatcgaaaactac
gtcgaatctgatcctggaagcaacgtagagggaaaccttaacgacgtctcaccagaattt
ttacaacaaatattgtcactgatttcatacggcaaacacaccacctacggcctatcggat
caaacgtacgaacggttccggaatcaactgtgtcgcgattttccaagagatcgcgtaccg
ctcattctagcaccgctgctatactcggaaaattctgaaatttccgccgaaatattgaaa
attaacacacacagcatcctacaatcgtcgatcatgaaaacttcctggacgaatctagtt
gtggaagttggctactcgtttacggctactctggacgactgccggaaccacctgctgaaa
gttggaggacgtgagataacgccacaggatgtggcgaagattgtgtcctccatgtgcttg
acgcacgaaaccctgtcggagagcaacataaacttgcctaccccgagtgcattctggccg
cagggaaatgatccttcgggtcaaaaaggcaaggatggtaatgggggatcgtcagcatcg
gaaaacaccacctggaagccggaagttctggtacaggcactaaaggaagtggtacccaat
ttgaactggaaggatgtatgtctggccttggatcatccggaatttatgctgaaagaccgt
gcgggattatctttactgttgacgatcgtcaagatgggcatgcagtcgagtaacatggga
cagaacttcccggtagagtgtctgtaccagcgttggaccaacgtcgagggtcagttgtcg
atcatatcgcagattttgaagtaccaagacctttactcgtttgccgatcatatctacact
agcgtttcgctggagctgctaaagacgccaccggaaacggacaacaaagaggtggcatcg
tggatgtcattgcacctggttgacgtgctgttgtacatcgcagatcatgcaaatctgagc
gacaaggtcatgaaaattttcaagatccctggagcagtctgtccggatatactgttcttg
gcgctgctacaaatcaatcctccgatgacgacggcaagacaggatctgtttacgaatttg
gtgccaattttcttgggcaatcacccgaactcaggaaccattcttcatcacgcctggaac
cattcgacctttaacgtcacgttacgcccaatcattctgcacgcaatgtctgactggtac
atggtgggagagggtgatcaatcgcgactctcgcgcatcctggatgtagcgcaggacttg
aaagctttgtcgaatctgctgaacattcgatcatacatgttcattatcgatctggcttgt
ctggcgtcgagacgtgaatatctcaagctagaaaagtggttagcggacaaaatccgcgaa
catggcgaagcgtttgtaaagacaatacttaagtttctgcaacgccgctgtccacaaata
atgggtgcaaagtacaacgaggaacagatcccgaagtcggctcagctgccaccggaaacg
ctgagcacaattctgaactgcttgcaagcttgtatgggcaactgtacgcctgaagtgtcg
gaaatgatacacagcatgacgcagtacggaatgatgttgaattcgaagacacgcgtccag
caacaacagcagcagcagcaacaacaagcgcctcaacagcaaccacctccaccgggtgtg
ttgcggcctcatcgcggactggaagcgttcggtccgaacgcaatgggcagtcaactgctg
ccacccatggtggaatcgttgaacagtctttcagcgaacataggtggccttagtatcggt
ggaccaggcggaggaaatagtgcgtttagcttcaataacatcatagctacgcccggatca
ccgtcacgactgcacccatcgagcagtccattcccgatgatgccgcttccgccgggagca
gctgctgccgctgctgctcaggccggtacacttggccgattgcagcaaacgccgaatgat
aagctcggtgcaggaggtggtggtggtcttcaaaacgctgccatcacacaatcaccgttc
cagactgaagcgacagctcagcctgtttcgaaggaggtggaagatgaagcgaacagctat
ttccaacggatctacaacttgccaccgcatccgacattatcgattgacgaagtgctcgat
atgttgcagcgttacaaggattcaccgaatcggcacgagaacgacgtctttcagtgcatg
ctacgcaatctgttcgaggagtataagtttttcccccagtatccggacaaagagttacaa
acaacggcacaattgtttggcggtatggtagaacgaaatctcgtcacaacgtacgttgcc
cttgggctggctctgcgttgcgtgttggatgcacttaagaaaccggaaggctcaaagatg
tattacttcggcattacggcgctggatcgttttaagaacaaattgcatctgtacccgaag
tattgcgagtacgtacgttcgattccacatttcagcgagtttcctccacatctgattgag
tacatcgattacggtgtgcagggtcatgatccgccaaacaaaacccttggtccaggaccg
ttaccgccaccaatcttacagttcattccgagtggtgcggcaggtcgcggaccggtcggg
aatccgctctaccgtagtaattctgtaacgggcaccagcaatctcacattggctggagtt
tcaacggccgcttctgccgtagccgctgcagcggccgctacggcagctgctggtacaggt
agtagtgcgggtacgccaggcaaaatgaatctagcagcgcagctagttgctcccggtgga
agtggaggcggtgctggtgtggcaggaagtagtggaagtggggctggcagtagtaccgga
ggtgggcaaccaccgcgcgtaaaatcgatcgcaaacgcaacgaacatcgatacgctgcta
gttgctacgcaggaccgcgaagagaagatcattgccccgccggatgcaatccaggacaag
acagcgttcatattcaacaacctgagtcagatcaatctgcagcaaaagtgtgaggaaata
aaagaaatactgcagaaagactactacacctggttggcacagtatctcgtcatgaagcgc
gcctccatcgaagtgaacttccacgtgctgtactccaactttctggatgcgctcaaaatt
gcggaaatcaataaactcgttacgaaggaaacgttccgtaacattcgagtgctgctacga
tcggacaagggtatagccaatttctccgaccgctcgttgctgaaaaaccttggccattgg
ttgggaatgatgacgctcggcagaaacaaaccgattttacatctagacattgacgtgaag
tcgttgctagtggaagcgtataacaagggacagcaagagctgctttatgtggtaccgttt
gtggcgaaagtgttggaatcgtgtgcaaagagtaaggtattcaaaccgccgaacccgtgg
acgatgtcgattatgaatatactggccgaactgcaccaagagccggaactgaagcttaat
ctaaagttcgagattgaggtactgtgcaagaacctcaacatagacgtgagtgatctcaaa
cccgctatctatctgaaggatcctgaacgtgcgcaaaacattgagtaccaactgtcacaa
cctaagccgccaaaggaggcacctacaataatgccaggcgcaggtgtcgctggaatcgga
gttggaggtggtggaggtgctggtagtggtgtcgtggctgtggtgtcccaacttccaccc
ggttcggatgagatgggctcgagtggaccatctagctctccggctaacgtggcgatggat
ccagcgctggcagcaacagggccaccagagcctcggttccactactcggacattaacatt
gcaaatccgagctacatcgcccagcacatcctatatcatccgaccatcaccattctgcac
acgcaatctcacttgaaggtgatcgtaaagaacagtctggagcgtacaataaccgaatgg
ataacgttgatcgttgatcgcagtgtgaagattgcatcgaaaacgaccgagcagattatc
cgtaaagacttcgcgcttgattccgacgagacgcgtatgcgccgggcagcgcacaatatg
gctcgcagtctggtagctggtatggcgatgattacctgccgcgaccaaatgttgcagagc
atccagaacaacatcaaaaccggcttcctaacagcgctgtcgcatgcacaaaaggacagt
atcgagggagccgccacacagctggccgtagacaacatcgagctggtatcagcgttcatt
cagaaggccgctatcgagaaggtggccctagagatggagaaaattctggcggaagatttt
cagctgcgcaagattgcacgacaggaaggccgtcgctattgggatgcaagcgtgctatcg
taccaaacggatcgaatgcccgagcgtattcggctcaatgtcggcggagtctcgccgagt
cagttggcagtgtatgaggagttttcacgcaacattcctggcttcctaccgatcacggag
cgagatgtggctcagtttgcaccgaagatatcggagttgctgccattcgttgctacaccg
gacgaaattggcgcaatgtacgatgagttggcaagcaagatggatgctttcattaaggcg
acacgcatcattcctatgttgcagcttcatacgaacaacatggaacagttgctggaatgt
ctgattcatgcgcaccgttcgttggacaacttgaccggatgtacgctgttgaataaggcg
gtggaaggattgctggaaggtttggtgaacattccagaccagctcgagcacatcaaactt
taccgcgatattcatctgcgagtgatgcgcctaatgcaagacaaccgactgtttggaccg
ttgtggaccaacaaagccatcacgcggtacatgttggaatgccgtgaagagttgcgctac
aacgtggaagctattgatttactgatttcgtccaacttcgtcaacatgcagcagttcgac
atcatgttggtgcagctgatggataatggcaacaattacgtagcggtcgtgtttgcgatg
cagctgcttcagacgttcttcatcgatgagcgtcacaactcatccatcaccgagaacgaa
ctgggaagcacaatcgaaatgctacaccgcctgaccgcacatcctcgtgcaccggaaggt
ctgacacatctgatcgaaatgctgcgtgcaaaccacgatccaaactcgttccttatggac
cgcgctgtcgttggtccgacgtcctacattcatgcgggtctagcacaagcaaggtcggac
attgacgattcacctggttttctggaacgggcagagtttctactcaaggattgggttacg
attgcactctcaccgaatagctgtcgtgatccgctgaaaggtttcagtgtgttcgtaggc
aaaatgaatgcgcatggtattctgaaaggcgatgaaccgctgacacgattcttccgcttt
gctactcagtactgcatcgatcttacctatcgaaacatgaacgaaccgaacgcaaaagca
aagattttccagttcatcgacgcgtacgtgcgcttgatcgcgttgctggtgaaacattcg
ggtgaaagtggcaacacgaacacgaagctgaatctgttaaacaagattcttggtattgtt
gttggtattctgttgcacgaccaggaggtacacgcaacggccttccagcaggtcggttat
catcgaatcttcgcgatgctatttctagagctgactacgcaagatccaatcttggagaat
atcagcatcagcgtgatcacggcattctgccacacgtatcacattttgcgaccgtctgcc
gcaccaggattttgctactcctggctagagctgatcgcacatcgtgtcttcatcggacgt
attcttgcgctgatccctcagcagaagggttggcacatgtactcgcagctactgatcgat
ctgttcaaatatcttgccccgttcttgcgcaacgctgagctggcgaaaccggtacagcat
ctgtataagggaacgctacgggtgttgctagtgctgctgcacgatttccccgaatttctt
tgcgattatcatttcgccttctgcgatgtcattccatcgaactgcatccagatgcgcaat
ctgattctgtcaccgtacccgcgaaacatgcgccttccggatccattcactccgaatctg
aaggttgacatgttgaatgatattggcggatcgcctcgtatttccatcaactacgtttcc
tccattcagccggcaagcttcaaaaaagatctcgactcgtatctgaaggcccgtgcaccg
gtaaccttcctgtcggagttgcgctcaaatctgcagatttcgaacgaggttggatcgcgc
tataatattccgttgatgaacgcgctggttctgtacgttggcacccaagccattgctcac
attcgatcgaaaaatttgggaccaacaatgtctacgattatccacagtgcacatatggat
attttccagaacttggcagtggatctggacaccgagggacgttatttgttcctgaacgcg
atcgctaaccagctacggtatccgaacagtcatacgcattactttagctgttgcattttg
tatctgttcgcagaggcaaactcggaagcgattcaggagcaaatcacccgcgttcttctc
gagcgcttgatcgtaaatcgtccacacccgtggggtttgttgatcacttttattgagttg
attaaaaatcccatttacaaattctgggatcacgatttcgttcattgtgcgccggaaatt
gaacgcctcttcgaatccgtggcaaagtcttgtatggtcactagcaaaagccagcagcaa
attcaaaacgtcgaatcggatataacggagtgtaactaa
DBGET
integrated database retrieval system
