Antechinus flavipes (yellow-footed antechinus): 127547642
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Entry
127547642 CDS
T08818
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
afz
Antechinus flavipes (yellow-footed antechinus)
Pathway
afz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127547642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afz03019
]
127547642
Messenger RNA biogenesis [BR:
afz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127547642
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127547642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
127547642
NCBI-ProteinID:
XP_051830538
LinkDB
All DBs
Position
2:complement(41042121..41135234)
Genome browser
AA seq
2385 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYSEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLQNVVYGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTAALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPPDVSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYESKMYFFGIAALDR
FKNRLKDYPQYCQHLASISHFMRFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTL
LVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKR
VSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHW
LGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPW
TMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLEEQLSA
PKKDVKQPEALPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNP
TIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMR
IAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQD
NCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIR
LKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYEKCITE
LEQHLHAIPPALGMNPQSQTLRSLLDAVVMSRNSRDAIAALGLLQKAVEGLLDATSGADA
DLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN
MQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHS
RGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLRE
WVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISY
RAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVV
GVLLQDHDVRQNEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKA
PGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELSKPMQIL
YKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLK
VDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYN
IQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIA
NQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcgacacggc
ccggaggcagataggcatttattacgctgcctattttctcatgtggatttcagtggcgat
ggtaaaagtagcggcaaagattttcatcagactcagtttctgattcaggagtgtgcatca
ttgattacaaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtctaaagccttcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaggttcaagaggtcatttttggtcttgctctcttgaattcttccagctcagat
ctacgaggttttgctgcccaatttgtcaaacagaaacttccagatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgccatagaggtc
ctgcacctcctcctctcccatctcctttttgggcagaagggagcttttggggttggacag
gaacagattgacgcttttcttaagacactgcgtagagattttccccaggaacgttgtcct
gtggtgcttgcaccactactttactctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagctaaaaccatgatggagagctctctggcagacttcatgcaa
gaagtaggctatggcttctgtgcaagtattgaagaatgtcgcaatataatcgtgcagttt
ggtgttcgagaggtcacagctgctcaggttgccagggttttgggaatgatggctcggact
cattcaggattgacagatggcattccgttacaatctatctcagctcctggcagtggaata
tggagtgatggaaaagataaaagtgatggtgcacaggcccatacctggaatgttgaagtc
ttgattgacgttctcaaagagttgaatccaagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagcaaaggacttcagaacgtagtatatggc
attcagagaggtttgggcttggaagtcttcccagtggatcttatttataggccttggaaa
catgcagagggccagctctctttcattcagcattcgctgataaatcctgaaatcttctgc
tttgctgactatccctgtcacacagttgccactgatatcctcaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcctggacttgattgaatctctcttgcgacta
gcagaggtgggacagtatgagcaggtcaaacagctcttcagctttcccatcaagcactgt
ccagatatgttggtattggccttactacaaatcaacacttcttggcatacactgcgccat
gaactcatctccaccctgatgccaattttccttggaaaccatcccaactctgccattatt
ttgcactatgcctggcatgggcagggacagtctccctcaattcgccagcttatcatgcac
gccatggcagaatggtatatgcgaggagagcagtatgaccaggccaaattgtcacggatt
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgtcgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcgtgtatgactttctta
aagagacggtgcccttccatcttgggcggccttgccccagagaaagatcagccaaaaagt
gctcagcttcctccagaaacactggcaacgatgttggcttgtctgcaggcttgtgcgggg
agtgtttctcaagagttgtcagagactatcctgaccatggttgccaattgcagtaatgtt
atgaataaggctcgacagccaccaccaggagttatgccaaagggacgtccccctagtgca
agcagcttagatgccatttctcctgtacagattgacccccttgctggaatggcatctctt
agtataggaggttcagctgccccacacacccaaagtatgcagggttttcctccaaatttg
ggttctgctttcagtacccctcagtcaccagcaaaagcctttccacccctttccactcca
aatcagactacagctttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttggcacaggtagcttgactggcataggaactgcggctctgggactccctgcagtgaat
aatgatccatttgtgcagaggaagctgggcacctccggactgaaccaacctacattccag
cagagtaagatgaaacctccggacgtgtctcaggtgtggccagaagcaaaccagcacttt
agtaaagagatcgatgatgaagcaaacagctactttcagcgcatctataatcatccaccg
catccaaccatgtctgttgatgaggtattagaaatgttacagaggtttaaggactccaat
attaaaagggaacgagaggtgtttaattgtatgctgaggaatttgtttgaagaatatcgg
tttttcccccagtaccctgataaagagctgcacataacagcctgcctgtttggtgggatc
atagaaaaaggactggttacttacatggcacttggcctggccctgcgctatgttcttgaa
gccttacgcaagccttatgaatccaaaatgtatttttttgggattgctgcactagataga
tttaaaaatagattgaaggactatccccagtactgtcagcacttggcctccattagtcac
tttatgcggtttcctcatcatctgcaggagtacatcgaatatggacagcaatctagagac
cctcctgtgaaaatgcagggttccattactacccctggaagtattgcacttgctcaggcc
caggcccaggcccaggcccaggttccagcaaaagctcctcttgctggtcaagtcagcact
attgtaaccacctcaaccactactactgtggctaaaaccatcacaatcaccaggcccaca
ggagtcagctttaaaaaagatgtgccaccgtctattaatactacaaatattgataccctg
ctggtggctacggaccaaactgagagaattgtggagcctccagaaaatgtccaggaaaaa
attgcttttatcttcaacaacctttctcagtcaaacatgacacaaaaagttgaagagttg
aaggaaacagtgaaagaagagtttatgccttgggtttcacaatatcttgtcatgaagaga
gtcagtattgagccaaactttcacagcctttattcaaattttcttgatactcttaagaat
cccgaatttaataaaatggttctgaatgagacctacagaaatattaaagtgcttttgacg
tcagataaagcagcagccaacttctcagaccgttccttgctgaagaacctgggccactgg
ctggggatgatcacactagccaaaaacaaacccatcttacatacagacttagatgtaaaa
tctttactgttggaagcttatgttaaaggacagcaggaattgctgtatgtggtgcccttt
gttgccaaagtcttagaatccagtgttcggagtgtggttttcaggccaccaaatccttgg
acaatggcaattatgaatgtactagctgagcttcatcaagaacatgatttaaagttaaac
ttgaagtttgagattgaggttctctgcaagaatcttgccctggacatcaatgagctaaaa
cctgggagcctcctgaaagacaaggatagacttaaaaacttagaagagcagctctctgcc
cccaaaaaggatgtcaagcagccagaagcacttcctcccatcacaactaccactacttct
accacaccagctaccagtaccacttgtacagctactgttcctccacagcctcaatacagc
taccatgatatcaatgtctattccctgggaggtctggcaccacacattactctaaatccc
acgattccattgtttcaggcccatccacaattgaagcagtgtgtacgtcaagcaattgaa
cgtgctgtccaagagcttgtccatccagtagtggatcggtcaattaagattgccatgact
acttgtgaacagattgtcaggaaagactttgcactggattctgaggagtcacgtatgcgg
atagcagctcatcacatgatgaggaacctgacggctggcatggctatgataacttgcagg
gaacctttactcatgagcatagctaccaatttgaaaaatagctttgccacagcactgcga
gccgcatccccccagcagagggaaatgatggaacaggcagcagcacagctagctcaggat
aattgtgaattggcatgctgcttcattcagaagactgcagtagaaaaggcaggtccagaa
atggacaagagattagcaactgaatttgagcttcgaaaacatgcaaggcaagaggggcgc
aggtattgtgatcctgttgttttgacgtaccaggctgagcggatgccagagcagatcaga
ttgaaggttggtggtgtagacccaaaacagctggctgtttatgaagagtttgcacgtaac
gttcctggcttcttgcctactaatgatttaactcagcctacaggatttttagctcagcct
atgaagcaggcatgggctactgatgatgtagcacagatctatgaaaagtgtatcacagaa
ctggaacagcatctgcatgccatccctccagccttaggcatgaaccctcagtctcagact
ctccggagccttctggatgccgttgtaatgtcgcgcaactctcgggatgccattgctgcc
ctgggcttgctgcagaaggctgtggagggcttgcttgatgccacaagtggtgcagatgct
gacctgctgctacgttacagggagtgtcacctccttgtactgaaagcattacaggatggc
cgtgcatatgggtctccatggtgtaacaaacagatcacaaggtgcctgattgagtgtcgg
gatgagtataaatataatgtggaagcggtagagctattaattcgcaaccatctggttaat
atgcagcaatatgatcttcacctggctcagtcaatggagaatggtttgaactatatggcc
gtggcatttgctatgcagttggtgaaaatactgttggtggatgaaagaagtgtggcccac
gtgactgaagccgatctgtttcataccattgagactttgatgaggatcaacgctcactca
cgaggaaatgcccccgaagggttgccccagctgatggaggtagtgcggtcaaactatgag
gctatgatcgaccgcgcgcacgggggccccaactttatgatgcactcaggcatctcacag
gcctctgagtacgatgatcctccaggcctgcgggagaaggcagagtacctgctgcgagag
tgggtgaacctttaccactcagcagcggctggccgcgacagcaccaaagccttctctgcg
tttgttggacaggtagagcttttggagagaaagatgcaccagcaaggaatcctgaagact
gatgacctcataacaaggtttttccgtctgtgcactgaaatgtgtgttgaaatcagctac
cgggctcaggctgagcagcagcataatcctgctgccaaccccacaatgatccgggccaag
tgttatcataacctggatgcctttgtgcggctcattgcactgctggtcaagcactcaggg
gaggccactaacacagtcaccaagatcaatctattaaacaaggttcttggtatagtagtg
ggtgtccttctacaggatcatgatgtgcgacagaatgaatttcagcaacttccctaccac
cgaattttcatcatgctgctcttagaactaaatgctcctgagcatgtgttggaaaccatt
aatttccagacactgacagctttttgcaatacattccacatcttgaggcctactaaagcc
ccaggctttgtgtatgcctggcttgaactgatctcgcatcggatatttattgcaagaatg
ctggcacacacaccacagcagaagggctggcctatgtatgcacaactattgattgattta
ttcaaatatttagctcccttccttagaaatgtggaactcagcaaacctatgcaaatcctc
tacaagggtactttacgagtgctgctggtcctcctacatgatttcccagaatttctctgt
gactaccactatggattctgtgatgtaatcccacccaattgcatccagttaaggaatctg
atcctgagtgcctttccacgaaacatgaggctacctgacccattcactcccaacctgaag
gtggacatgttaagtgagatcaacattgctcctcggatcctcactaatttcactggagtg
atgcctcctcaattcaaaaaggatttggattcctatcttaaaactcgatcgccagtcact
ttcctatctgatttgcgcagtaacctacaggtatcaaatgaacctggcaatcgctacaac
atccagctgataaacgcactggtgctttacgtcggtactcaggccattgcccacatccac
aacaaaggcagcacgccgtccatgagcaccatcactcactcggcgcatatggacatcttc
cagaacttggctgtggacctagacacagaaggtcggtacctcttcttgaatgcaattgcc
aatcagctgcggtatccaaacagccacactcactacttcagttgtaccatgctgtacctt
tttgcagaggccaacactgaagctatccaggaacagatcaccagggttctcttggaacgg
ttgattgtaaataggccacatccttggggtcttctcattaccttcattgagctgattaaa
aatccggcatttaagttctggaaccacgagtttgttcactgtgccccagaaattgaaaag
ttgttccagtccgttgcacagtgctgcatgggacagaagcaggctcagcaagtgatggaa
gggaccggggccagttag
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integrated database retrieval system
