Agarivorans sp. Z349TD_7: ACRRSZ_04500
Help
Entry
ACRRSZ_04500 CDS
T11368
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
agaz Agarivorans sp. Z349TD_7
Pathway
agaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACRRSZ_04500 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agaz03021
]
ACRRSZ_04500 (rpoB)
03400 DNA repair and recombination proteins [BR:
agaz03400
]
ACRRSZ_04500 (rpoB)
Enzymes [BR:
agaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACRRSZ_04500 (rpoB)
Transcription machinery [BR:
agaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACRRSZ_04500 (rpoB)
DNA repair and recombination proteins [BR:
agaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACRRSZ_04500 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XUY88719
LinkDB
All DBs
Position
593977..598011
Genome browser
AA seq
1344 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVVDTPYLLSIQLDSFEKFIEIDPEGEYGLEAAFRSVFPIA
SYSGYSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVLFDREAPAGTVKDIKEQ
EVYMGEIPLMTGNGTFVINGTERVIVSQLHRSPGVFYDHDRGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEMTTQEILATFFDTTTFELKDGKVLME
LVPSRLRGDTVSFDVILNGEVLIETGRRVTARHIRQLEKSGIEQIEVPVEYLADKVLAED
YVDEATGEIIAEANSELNLELIAALAQAGYSMLKTIYTNDLDNGSFISDTLRVDSSTNRL
EALVEIYRMMRPGEPPTKDAAEALFENLFFNGDRYDLSTVGRMKFNSRVGRDDGRVAGVL
DKDDIIKVMQMLIEIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDALMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAVYSRTNEFGFLETPYRKVINSVIT
DEVDYLSAIDEGTYVIAQANAEVDADGKLLETDLVPCRHKGESTYMPTDQIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERAVAVDSGVTVVSK
RGGTVDYADASRIVVKVNEDEMSPGEAGIDIYSLTKYTRSNQNTCINQRPVVKAGEFVSK
GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIGISENVVKEDRFTTIHIQELSCI
ARDTKLGSEEISADIPNVGESALSKLDESGIVYVGAEVKPGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVFGTVIDVQVFTRDGVEKDKRAQEIESMQLKEAKKD
LTEEFKILEEGIFARAKSVLMNAGKSESDLNRQAPTEWLQAALSDEAAQTQLEQIAEQYD
EIKAEFDKQFDIKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTI
VPREDMPYDETGRPVDICLNPLGVPSRMNIGQILETHLGLAAKGVGEKIDEMLKVQREIE
MDKLRDFIQKVYNVGDDTLKVDIASFTDEEVMTLAKNLRGGVPMATPAFDGAKEAEIKEL
LRLADLPDSGQIVLCDGRTGQEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP
LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG
MPESFNVLLKEIRSLGINIELDEL
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatacagagaaaaaacgcattcgtaaggactttggaaaacgtcctcaa
gtagtggacacgccttacctgctttcaatacagcttgactcttttgagaaattcatagag
atcgatcctgaaggcgagtatgggctggaagctgcattccgcagtgtattcccgattgcc
agttattcaggatattcagagctacagtacgttagctatcgtcttggcgagccggtgttt
gacgttaaagaatgtcaaattcgtggagtcacctactctgctcccttgcgcgttaaattg
cgtttagtgttgtttgaccgtgaagctccggctggcacggtgaaagacatcaaagagcaa
gaagtttacatgggtgaaattcccttgatgacaggtaacggtacttttgtaattaacggt
accgagcgtgttatcgtatcccaactacaccgtagcccgggtgtgttttacgaccacgat
cgtggtaaaacgcattcatcaggtaaggtcttatataacgctcgcgttattccttaccgc
ggttcgtggttagatttcgaattcgatccgaaagataatttatttgttcgtattgaccgt
cgtcgcaaactaccggcctcgatcattttgcgtgctttagaaatgaccacccaagaaatc
ttggcaactttcttcgataccaccacctttgaattgaaggatggcaaggtgttgatggag
ttagtgccatctcgcttacgcggtgatacggtttcttttgatgtgatcttgaatggcgaa
gttttaattgaaactggtcgccgggtgacagctcgtcacattcgtcaattggaaaaatct
ggtattgagcagattgaagtcccagtcgagtaccttgccgataaagtgcttgcggaagac
tacgttgatgaagccactggtgaaatcattgcagaagcaaacagcgaattaaacttagag
ttgatcgcagctttagcgcaagcgggttattcgatgttgaaaaccatctataccaatgac
ttggataatggttcattcatctcggatactttacgtgtagattcatcgactaatcgtctt
gaggccttagttgaaatttaccgcatgatgcgcccaggtgagccaccaacaaaagatgct
gccgaagcactattcgagaacttgttctttaatggtgaccgttatgacttatctactgtt
ggccgtatgaagttcaacagtcgtgttggtcgtgacgacggacgagttgctggtgtgctc
gacaaagacgacatcattaaagtgatgcaaatgctgatcgagatccgcaatggtcgtggt
gaagtcgatgatatcgatcacctcggtaatcgtcgtatccgtagcgttggtgaaatggcc
gaaaaccaattccgtgttggtttagttcgtgtagagcgtgcagttaaagagcgtttgagt
ctcggtgatcttgacgccttgatgccacaagacttaattaacgccaagccgatttcggct
gcggtaaaagagttctttggttccagccaattgtcgcaatttatggaccaaaacaacccg
ctttctgaagtaacacacaaacgtcgtgtttctgccttaggcccgggtggtttgactcgc
gaacgtgctggctttgaagtacgtgacgtacacccaacgcactatggtcgtttatgtccg
attgaaacgccagaaggtccaaacattggtttgattaactcattagcagtttattcacgc
accaatgagtttggcttcttggagacgccataccgtaaagtgatcaacagtgttattact
gatgaagttgattacttgtcggccattgatgaaggcacctacgtgatcgctcaggcgaac
gcagaggtagatgccgatggtaagttactagaaaccgatttagtgccttgtcgccataaa
ggcgaatcgacttacatgccgactgatcaaattcagtatatggatgtgagcccgcagcaa
attatttctgttgctgcttcgttgattccgttcttagaacacgatgatgcgaaccgggca
ttgatgggttcaaacatgcaacgtcaggcagttccaacgctgcgtgctgataaaccattg
gttggtactggtattgaacgtgcggttgccgttgattccggtgtgaccgtggtatctaag
cgtggtggtactgttgattatgctgacgcaagtcgtattgttgttaaagtaaatgaagac
gaaatgagtcctggtgaagcaggtatcgacatttacagtttaaccaaatacacccgttct
aaccaaaatacctgtattaaccaacgtccagtggtaaaagctggtgagtttgtttctaaa
ggcgatgtactcgcagatggcccttcaactgacttaggtgagttggcgttaggtcaaaat
atgcgcgtcgcgtttatgccttggaatggttataacttcgaagattcgatcggtatttct
gaaaacgtggtgaaagaagatcgcttcactacgattcacattcaagaattaagctgtatt
gctcgtgataccaaattgggaagcgaagagatttcagcagatattcctaacgtgggtgaa
tccgcactgagcaaacttgatgagtcaggtattgtgtatgtgggggcagaagttaagcct
ggtgatattctggtcggtaaggttacgccgaagggtgaaactcagttaacacctgaggag
aaacttttacgagctatcttcggtgagaaagcgtcggatgtgaaagatacatccctacga
gtacctaattcagtatttggtaccgtaattgacgttcaggtgttcactcgtgatggcgta
gaaaaagacaagcgagctcaagaaattgagtcaatgcagctgaaagaagcgaagaaagat
cttaccgaggaattcaaaatccttgaagagggtatctttgctcgtgctaaatcagtattg
atgaacgctggtaagtcagaatcagacctaaatcgccaagcgcctacagaatggttgcaa
gcggcattaagtgatgaagcagcacaaacccagttagaacaaattgctgagcaatacgac
gaaatcaaagccgagtttgacaagcaattcgacattaagcgccgtaagatcactcaaggt
gatgatttagcgcctggtgtattgaaaattgtgaaagtttacttagctgttaaacgtcgt
attcagcctggtgacaagatggcgggtcgtcacggtaacaaaggtgtaatttctaccatt
gttcctcgtgaagatatgccttatgacgaaactggccgtccagtagacatctgcttgaac
ccgctaggtgtaccatcgcggatgaacattggtcagatcctagaaacccacttaggcctc
gcggctaaaggtgtgggtgagaaaatcgacgaaatgctgaaagttcagcgtgaaatcgaa
atggataaactgcgtgatttcattcagaaagtgtacaacgtcggtgatgatacactgaaa
gttgacattgctagcttcaccgatgaagaagtaatgacactggcgaagaacctacgtggt
ggtgtgccaatggcaaccccagcatttgatggtgctaaagaagctgaaatcaaagagcta
ttgcgcttagccgatttgcctgattcaggccaaattgtgttatgtgatggtcgtaccggt
caagaatttgagcgccctgtaaccgtgggttacatgtacatgttgaaattgaaccacttg
gttgatgacaagatgcatgctcgttctactggttcttacagcttagttacacagcaaccg
cttggtggtaaagcccagtttggtggtcagcgtttcggtgagatggaagtatgggcactt
gaagcttatggtgccgcttacaccttacaggaaatgctcacggttaaatccgatgatgtg
aacggtcgtactaaaatgtacaaaaatatcgttgacggtaatcatcagatggaacccggc
atgccagagtcgttcaatgtactacttaaagaaattcgctctttgggtattaatattgag
ttagacgagctgtaa
DBGET
integrated database retrieval system
