Archangium gephyra: AA314_02107
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Entry
AA314_02107 CDS
T03948
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
age
Archangium gephyra
Pathway
age03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
age00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AA314_02107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
age03400
]
AA314_02107
Enzymes [BR:
age01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AA314_02107
DNA repair and recombination proteins [BR:
age03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AA314_02107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKJ00481
LinkDB
All DBs
Position
complement(2493493..2497029)
Genome browser
AA seq
1178 aa
AA seq
DB search
MPPVAGDPFARVLELLRPGQRVRTQGLQGAARGHALARLTRTLKAPLVCIATDEEAADAL
ANDLAFFLGGKGTPFEPHVLRLPADEVLPYDELSPDADTVADRLGALFHLSQGTRFPAIV
LSMRGLLRRVLPPQVMKELSERIGVGQDFDRDELARKLANMGYQSSPLVEDLGTFSVRGG
LIDVFSPLYEKPVRIEFFGDTIESIRAFDPETQRTVDTLKEIILLPAREVIFSEQTRVRA
EAAAREVADRINLPTTKLRERLEAIREGLPGFGLEGLLPGFFEGGLGTLFDYLRLWHPEP
LFYLDDPMGLERMAEDLWTEVERSAAAADAEQELTYPPLEHFLTREQAERQLEAFRVLEG
GGLSLTQGEAPPVLFPFGTTQDVREAILAHHGEEGALTPLIERLQRWRDTRIACAVACGS
LSQADRLKHLLLDRNVMVRVHPGPLEDAATLFEPSVFAHLFTGEVSHGFVDGAGGLAVLS
DEEIFGARARRRQRRSKNLDAFASGFKDLKEGDIIVHTDFGLGRYAGLTKMQVNGVPGDF
LVLEYAGKDKIYLPVSRMRLIQKFTGGDPTKVTLDKLGTTSWEKTKKRVKEQLLKMAADL
LTIAAARRAHAGHAFSAPDRYFAQFEADFDFEETPDQAKAIEDVLSDMQKTEPMDRLVCG
DVGYGKTEVAMRAAFKATLDRKQVAVLVPTTVLAQQHYLSFKKRFKDYPVVVDVISGMKK
PAEVREILKRAKEGKVDILIGTHKLLGGDVTFKDLGLLVVDEEQRFGVKHKEQIKKLRAL
VDVLTLSATPIPRTLHMAMSGVREMSIIATPPQDRRSIRTFVLKFDEQTIKEAIEREIAR
GGQVFFVHNRVESLPSMEEMLKRLVPNVSVGVAHGQMGEGQLEKAMLEFTEKKHQVLLCT
SIIESGIDISSANTMIVNRADTFGLAQLYQLRGRVGRSKERAYAYLLVPTRRVVTKDAQR
RLEVLQRFTELGAGFSIASHDLEIRGAGNLLGSEQSGSISAIGFDLYAQLLEEAVAEVRG
EAPRVQIEPEITMPLPALIPDDYVPDVHQRLVFYKRFSQASNPDEVQDLRSELVDRFGEA
PDEVDNLSEQTLLKIDMRDLRLRALEGGPGRLVVTLGADALLDGMKVAGLVQRSKGVYRL
TPDMKLVVKLGAEVRGPSLIAEARKVLRDLHTCALPEA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccgtggcaggggaccctttcgcccgggtgctggagttgctgcgcccggggcag
cgtgtccgcacgcaaggcctccagggcgccgctcggggccacgcgctcgcccggctgaca
cgcaccctgaaggcgccgctcgtctgcatcgccacggacgaggaggccgcggatgccctc
gccaatgacctcgccttcttcctcgggggcaagggcacgcccttcgagccccacgtcctg
cgcctgccggccgacgaggtgctcccctacgacgagctctcgccggatgcggataccgtc
gcggaccggctcggagccctcttccacctgagccagggcacgcgctttcccgcgatcgtg
ctctccatgcgcggcctgctgcgccgggtgttgcccccccaggtgatgaaggagctctcc
gagcgcatcggcgtggggcaggacttcgatcgggacgagctggcgcggaagctcgccaac
atgggctaccagagcagcccgctcgtcgaggacctgggcaccttctccgtgcggggtggc
ctcatcgacgtcttcagcccactctacgagaagcccgtccgcatcgagttcttcggcgac
accatcgagtccatccgcgccttcgatccggagacgcagcgcacggtggacacgctcaag
gagatcatcctcctgccggcgcgcgaggtcatcttctccgagcagacgcgcgtgcgcgcc
gaggccgcggcccgcgaggtggcggaccgcatcaacctgcccaccacgaagctgcgcgag
cgcctggaggccatccgcgagggcctgcccggcttcggcctggagggcctgctgcccggc
ttcttcgagggaggcctgggcaccctcttcgactacctgcgcctgtggcaccccgagccg
ctcttctacctggacgatcccatggggctcgagcgcatggccgaggacctgtggacggag
gtggagcgctcggccgcggcggccgacgcggagcaggagctcacctacccgccgctggag
cacttcctgacgcgcgagcaggcggagcggcagctcgaggccttccgcgtgctggagggc
ggaggcctgtcgctcacccagggcgaggcgccgccggtgctcttccccttcggcacgacg
caggacgtgcgcgaggccatcctcgcccaccatggtgaggagggcgcgctcaccccgctc
atcgagcggctccagcgctggcgcgacacgcggattgcgtgcgcggtggcctgcggcagc
ctcagccaggcggaccggctcaagcacctgctgttggaccggaacgtgatggtgcgcgtc
catccggggccgctggaggacgccgccacgctcttcgagccctccgtcttcgcgcacctc
ttcacgggcgaggtgagccacggcttcgtggacggcgcgggcggcctcgccgtgctctcg
gacgaggagatcttcggagcgcgggcacgccggaggcagagacgctcgaagaacctggat
gccttcgcctcgggcttcaaggacctgaaggaaggcgacatcatcgtccacaccgacttc
ggactgggccgttacgcgggcctgacgaagatgcaggtgaacggggtgcccggggacttc
ctcgtcctggagtacgcggggaaggacaagatctacctcccggtgagccgcatgcggctc
atccagaagttcaccggtggggatcccaccaaggtgacgctggacaagctggggacgacg
tcctgggagaagacgaagaagcgggtgaaggagcagctgctgaagatggcggcggatctg
ctcaccatcgcggcggcgcggcgggcgcacgcgggccacgccttcagcgcgccggaccgg
tacttcgcccagttcgaggcggacttcgacttcgaggagacgccggaccaggccaaggcc
atcgaggacgtgctcagcgacatgcagaagaccgagccgatggaccggctcgtctgcggt
gacgtgggctacggcaagacggaggtggcgatgcgcgccgccttcaaggccacgctggac
cgcaagcaggtggcggtgctggtgcccacgacggtgctggcccagcagcactacctgtcc
ttcaagaagcgcttcaaggactacccggtggtggtggatgtcatctccgggatgaagaag
cccgccgaggtgcgggagatcctcaagcgcgccaaggaaggcaaggtggacatcctcatc
ggcacgcacaagctgctgggtggggacgtgaccttcaaggacctggggctgctcgtggtg
gacgaggagcagcgcttcggggtgaagcacaaggagcagatcaagaagctgcgcgcgctg
gtggacgtgctcacgctgtcggcgacgccgattccgcgcacgttgcacatggccatgtcg
ggcgtgcgcgagatgagcatcatcgccaccccgccccaggaccggcgttccatccgcacc
ttcgtgctgaagttcgacgagcagaccatcaaggaggccatcgagcgggagatcgcccgc
gggggccaggtcttcttcgtgcacaaccgggtggagtcgctgccctcgatggaggagatg
ctcaagcggctggtgccgaacgtctcggtgggcgtggcgcacgggcagatgggcgagggc
cagctcgagaaggcgatgctggagttcaccgagaagaagcaccaggtgctgctgtgcacc
agcatcatcgagagcggcatcgacatctcgagcgccaacacgatgatcgtcaaccgggcg
gacacgttcggcctggcgcagctctaccagctgcgagggcgcgtgggccgctcgaaggag
cgcgcgtacgcgtacctgctggtgccgacacggcgggtggtgacgaaggacgcgcagcgg
cgcctggaggtgttgcaacgcttcacggagctgggcgcgggcttctccatcgcgagccac
gacctggagattcgaggcgcgggcaacctgctgggctccgagcagtcgggctccatctcg
gcgattggtttcgacctgtacgcgcagctgctggaggaggcggtggccgaggtgcggggc
gaggcgccgagggtgcagatcgagccggagatcacgatgccgctccccgcgctcattcca
gacgactacgtgccggacgtgcaccagcggctggtcttctacaaacgcttcagccaggcg
agcaatccggacgaggtgcaggacctgcgctcggagctggtggaccgcttcggcgaggcg
ccggacgaggtggacaacctctcggagcagacgctgctgaagatcgacatgagggacttg
aggctgcgcgcgctggagggaggcccgggccggctggtggtgacgctgggcgcggacgcg
ctgctggacgggatgaaggtggcggggctggtgcagcgctccaagggcgtctaccggctc
accccggacatgaagctggtggtgaagctgggcgccgaggtccggggcccgtcgctcatc
gccgaggcccggaaggtgctgcgcgacctgcacacctgcgcgctgccggaggcgtga
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