Archangium gephyra: AA314_02665
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Entry
AA314_02665 CDS
T03948
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
age
Archangium gephyra
Pathway
age03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
age00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AA314_02665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
age03400
]
AA314_02665
Enzymes [BR:
age01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AA314_02665
DNA repair and recombination proteins [BR:
age03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AA314_02665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKJ01039
LinkDB
All DBs
Position
3224239..3226803
Genome browser
AA seq
854 aa
AA seq
DB search
MGTYRAKRDFSLTSEPAPEVPAPRGEGGPIFVVHKHDATRLHYDLRLEIDGVLVSWAIPK
GPSYDPADKRLAVQTEDHPLAYATFEGRIPDGAYGAGDSLLWEEGTFDTVPPGQASEQLA
RGRLHVVLHGHKLEGGWHLIRTRPMGKKAQWLCFKAKDGTEQPGYDVTVEHPESVKSGQS
ATRGPGRRTRRTAAQRAPAKPVRASRPARTKGSARTPEALLGKVWPPMLATLAQVDATAD
ADWRFEVKYDGFRAIAAFQGGRIALQSRNGNDLSSRFPTIFQALEALGEHEAVVDGEIVA
LDPKGRSRFQLLGKGVEERYVIFDVLWLEGEDVRSLPLEERRARLERLLEGVKPPLEIAE
QVKGSAKQSLSQAKRRGLEGVMAKRVGSPYTPGRGADWLKLKVQANQEVAIVGFTPMANE
RPELGSLLVAVREGDTWKYAGKVGTGYSTKVRRELRTLLARDVVKKSPVKDAPYVRDALH
NEEAFWVKPRYVAQVAFTEWTEDGRLRHPSFQGLRSDKRPEECVREKPRSTPVRATRGPH
RRTGTKTRQATRAAGRTAVARKQATRAPSPVAPVVLTHGERVLFPQKGFTKADVFAYFRD
VAPLMVPALTGRPLALQQWPRGVDEPGFFRQGVQGTPDWLTTTCIHHEARSLPHVVVDRP
ESLLWLANQSALTLHIWSSRVEHLEEPDWVVFDLDPGPAGTFDDLIQLTLSLRRYLEGLG
LASVPKTSGKRGLHVLVPLAPGHTYAQAGAFANKAFEAVAAEHPRLATVERSKERRQGRL
YLDAGQNAWGKTVVAPYSLRALPHAPVSTPLSWSEVTPKLNPARFTLDSVRRRLDKVGDL
FAPALAGGQTLPPA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
ttgggtacctaccgcgccaagcgtgacttctccctcacctcggagcccgctccggaagtc
ccggctccgcgcggtgaagggggccccatcttcgtggtgcacaagcacgacgccacccgg
ctgcactatgacctgcggctggagatcgacggcgtgctggtgagctgggccattcccaag
ggccccagctacgacccggccgacaaacggctcgccgtccagaccgaggaccaccccctg
gcctacgcgaccttcgagggccgcatccccgatggggcctatggggcgggagactcgctc
ctctgggaggagggcaccttcgacaccgtgccgccgggccaggcctccgagcagctcgcg
cgcggccggctgcacgtggtgctgcacgggcacaagctcgagggcgggtggcacctcatc
cgcacgcgccccatgggcaagaaggcgcagtggctgtgcttcaaggccaaggatggcacc
gagcagcccggctacgacgtcaccgtggagcaccccgagtccgtgaagtccggccagagc
gccacccgcgggcccggccgccgcacccggcgcaccgccgcccaacgtgccccggccaaa
cccgtgcgtgcctcccgtcccgctcgcaccaaggggagcgcccgcacgcccgaggcgctg
ctcggcaaggtatggccccccatgctggccacgctggcccaggtggatgccactgcggac
gccgactggcgcttcgaggtgaagtacgacggcttccgcgccatcgccgccttccagggc
ggccgcatcgccctgcaatcgcgcaatgggaatgatctctcctcgcgcttccccaccatc
ttccaggccctggaggcgctcggggagcacgaggccgtggtggacggggagatcgtcgcc
ctggatcccaagggccgctcgcgcttccagctgctcggcaagggcgtcgaggagcggtac
gtcatcttcgacgtgctgtggctggagggggaggatgtccgctccctgccgctggaggag
cgccgggcgaggctggagcggctgctcgagggcgtgaagcctccgctggaaatcgccgag
caggtgaagggcagcgcgaagcagtcgctgtcgcaggcgaagcggcgcgggctggagggc
gtcatggccaagcgcgtgggcagcccgtacaccccgggccgcggcgcggactggctcaag
ctcaaggtgcaggccaaccaggaggtcgccatcgtgggcttcacgcccatggccaacgag
cggccggagctgggctcactcctggtggcggtgcgcgagggcgacacctggaagtacgcg
ggcaaggtgggcacgggctactccacgaaggtgcggcgcgagctgcgcacgctcctggcc
cgtgacgtggtgaagaagtctcccgtgaaggacgctccgtacgtgcgagacgccctgcac
aacgaggaggccttctgggtgaagccccgctacgtggcccaggtggccttcaccgagtgg
acggaggatggccggctgcgccacccgtccttccaggggctgcgcagtgacaagcgtccc
gaggagtgcgtgagggagaagccgcgcagcacgcccgtgcgtgccacccgggggccgcac
cggcgcaccgggacgaagacgcgccaggcaacgcgcgccgcgggcaggacggccgtggcc
cgcaagcaggccacccgggctcccagccccgtggcgcccgtggtgctcacccatggcgag
cgggtgctcttcccccagaagggcttcaccaaggcggacgtgttcgcctacttccgggac
gtggcgccgctgatggtgccggcgctcaccggccgcccgctcgcgctgcagcagtggcct
cgcggcgtggacgagcccggcttcttccgccagggggtgcagggcacgccggactggctc
accaccacgtgcatccaccacgaggcccgctccctcccccatgtggtggtggaccggccc
gagtccctgctgtggctcgccaaccagtccgccctcaccctgcacatctggtccagccgg
gtggagcacctggaggagccggactgggtggtgttcgatctcgaccccgggccggcggga
accttcgatgacctcatccagctgacgctctcgctgcggcgctacctggaggggctgggg
ctggccagcgtgcccaagacgtccggcaagcggggcctgcacgtgctggtgccgctcgcg
cccgggcacacctacgcgcaggcgggggccttcgccaacaaggccttcgaggccgtcgcc
gccgagcacccgcggctggccaccgtcgagcgctccaaggagcggcgtcagggccggctg
tacctggacgcggggcagaacgcctggggcaagacggtggtggcgccctactccctccgg
gccctgcctcacgcgcccgtgtccacgcccctctcctggtccgaggtgacgccgaagctc
aaccccgcgcgcttcaccctggacagcgttcgacggcgcctggacaaggtgggggacctg
ttcgccccagcgttggctggtggacagacgcttccacccgcttga
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