Arachidicoccus ginsenosidivorans: FSB73_10005
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Entry
FSB73_10005 CDS
T06150
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
agi
Arachidicoccus ginsenosidivorans
Pathway
agi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB73_10005 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agi03019
]
FSB73_10005 (rny)
Messenger RNA biogenesis [BR:
agi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FSB73_10005 (rny)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QEC71950
UniProt:
A0A5B8VKC3
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Position
2504553..2506121
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AA seq
522 aa
AA seq
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MTSELIFEAIVAIVGVVVGIIAGKFIFAKDNRRQLEEAEEKAKGIVKEAHLRSETIKKEK
QLEAKEKFVQLKAEHDKEILERNKKIGDIENKIKQKENSINQKENALDRQIKENNVIKDN
LNKQIEVVNLKRTELEKHQEEHIRRLEKISNLSSEEAKAQLIENLKSEARTQALGLQQDI
IEEAKQKANKEARKIIIQSIQRTAAEQTIENTVTVFNLETDEVKGQIIGREGRNIRAIEA
ATGVDLIVDDTPEAVILSSFDPLRREIARLSLQRLVSDGRIHPARIEEVVEKTRRQLEEQ
IMEIGERTIIELGIHGLHKELVRIVGKMRFRSSYGQNLLMHSRETANLCGIMASELGLNP
KLAKRAGLLHDIGKVPDEETELSHALYGAKMAEKYGENPAVVNAIGAHHDEMEMLYVISP
IVQACDAISGARPGARREIMQQYIQRIKDLESLAQGYTGVEKAYAIQAGRELRVIVEADK
VTDDDSNKLSFEIAQKIQTEMTYPGQIKVTVIREKRAVNVAR
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcggaattgatatttgaggctatcgttgccattgttggcgtggtagtgggtatt
atagcgggaaaattcatttttgccaaggacaaccgcagacaattggaggaagcagaagaa
aaagccaagggcattgttaaagaggcacatctgcgttcagaaaccattaaaaaagaaaaa
caacttgaggcaaaagaaaaatttgttcaactaaaagcagaacacgataaagaaattctg
gaaagaaataaaaagatcggagatattgaaaataagatcaagcagaaggaaaactcaatt
aaccagaaggaaaatgcattagatcgtcaaatcaaagaaaataatgtcatcaaggacaat
ctgaataaacagattgaggtggttaacctgaaaagaacggaactggaaaaacaccaggaa
gaacatatccgtcggctggaaaagatctccaatctttcctcagaggaagctaaagcgcaa
ctcattgagaatctgaaaagtgaggccagaactcaggctttaggcttacagcaggatatt
atagaagaagccaagcagaaggccaataaagaagcccgtaaaattattattcagtccatt
cagcggacggctgcagagcagactattgaaaataccgtcaccgtatttaatctggaaacc
gatgaggtgaaaggccagattattggtcgggaaggccgtaacatccgggccattgaagct
gcgacaggtgttgacctgatcgtagatgataccccggaagcagtgattctttccagtttt
gatcccctgcgtagagagattgcccgtctttccttacagcgactggtatctgatggtcgt
atccatccggccagaatcgaagaggtggttgaaaaaacgcgccggcagctggaagagcaa
attatggaaatcggtgagcggacgattatcgaactcggcatccacggtttacataaagaa
ctggtcagaatcgtagggaaaatgcgattcaggtcttcctacgggcagaacttgctgatg
cacagtagagaaacagccaatctttgtggtatcatggcctcagaattaggcctgaatcct
aaactggccaaaagagcagggcttttacatgatattggtaaagtacccgatgaagaaacc
gaattaagccatgccctttatggagcaaagatggcagagaaatatggagagaatccagct
gtggtaaatgccattggcgctcaccacgatgaaatggaaatgctgtatgtgatttctcct
attgtccaggcttgtgatgccatcagtggggcaagaccaggagcgcgtcgcgagatcatg
caacaatacattcagcgcatcaaggacttggaatcgctggcccaagggtataccggtgtc
gagaaagcttatgctattcaggcgggtcgcgaactccgtgttattgtggaagcagataag
gtaactgatgatgactccaataaactcagttttgagattgcccagaagatacagactgaa
atgacctatcccggccagatcaaagtaaccgttatccgggagaaaagagcggtgaatgtg
gccagatag
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