Alnus glutinosa (common alder): 133872729
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Entry
133872729 CDS
T10577
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
aglu Alnus glutinosa (common alder)
Pathway
aglu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133872729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aglu03021
]
133872729
Enzymes [BR:
aglu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133872729
Transcription machinery [BR:
aglu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
133872729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2635
Med15_C
Motif
Other DBs
NCBI-GeneID:
133872729
NCBI-ProteinID:
XP_062166295
LinkDB
All DBs
Position
7:6691890..6733758
Genome browser
AA seq
1694 aa
AA seq
DB search
MAQPLEGTTKSFEAVRFSFFTDEEVRKHSVVKITNSILLDSMERPVPGGLYDPKLGPLDE
RTLCKTCEQRSFHCPGHFGRIDLVSPAYNPLLFNILHSLLQSTCFFCHHFRASRSQVETC
VSQLKLIVKGDVVGAKRLDLDTSSETSYPDDIDVSQYTDKEHLCQQGWTSLQFTEAMSAL
RKFMKPRSVVCKNCEARNPKISKPTFGWFYMSGMSGANARRNVIQGIKVGRSLTGGTNGK
TSLEVQNTSDMTPWGDVVDTAETETSSAISSEAQDSPARRHRKKGGEVPLEFFKQKDLFS
GPLLPSEVKDIVKLLWENESQLCSFISDIQQQGLQMKDAYSIFFLETILVPPIKFRPPSK
GGDSVMEHPQTVLLNKVLQSNISLGNAHVNNLEYSKIVRQWMDLQQSINVLFDSKTATGQ
GRRDVASGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTY
PERVTPWNVEKLRKAIINGPEIHPGATHYVDKLDTRQLPAGQSKNERDRRTSISRKVSSS
QGLLTQHGKGCDYEFEGKFVRRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMH
YANCSTYNADFDGDEMNVHFPQDEISRSEAYNIVNANNQYVKPTSGEPIRSLIQDHIISA
VLLTKKDTFFNRDQFNQLLYCAGLSASSPASFFGKFGQKVCILNSEDEMQPLLPAIWKPE
PLWTGKQVISALLNHITKGHPPFSVEKDAKLPRDFFKSRSDEDELDKDKLSKGRKVDEDA
SKRKEPDEDKLLIYKNDLVRGVIDKAQFGEYGLVHMVQELYGSNTAGILLSALSRLFTTF
LQMHAATCGVDDLLLTVNKDYEREKNLQDCEKVGEDVHLLFVNGKGGDEIADADVLRVNI
EKKIRSNGESALTDLDRKMISKLNEELSKNFFKELLSKGLFKPSGKNCISLMTTSGAKGA
TVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFSPWDWAARAGGFIIDRFLSGLHLQEYY
FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKICYDHTVRDADGSIVQFRYGEDGVD
VHQTSFLANFEALAPNQEIIFTKSCQELRKSNSYIKELPYALKEKARDFVHKFSLKKRNP
DIFKEEDFLKLVEHKYVLSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLG
IPRLQEILMTASSDIKTPVMTCPFQLGSSKEDASRLADKLKKITVADIIKSMKVSVMPAA
VHERQNCRIYKLEMMLYVPENYPKHTDISLEDWEESLKVVFVRELEDAIQNHLLLLSKIS
GIKNFMPDSQSDASNGTDDDASGNRSERQEENDDDEDVDDGGSEDLGLDAQKRKQQATDE
MDYEDTSDEELNEGELTAGSESEIDQVENDIEVSKDDVIGGMPDAKDKTSELSGLGKSSK
QKSKGKKNQPEVKKKKRSRGKLVKKDYDRACFVKAKGMHFEVHFRFIGEPHILLAQIALK
TAKKVYIQSFGKIDGCKIISCKEKQVIYYGINPKDRKSISPAEKEKVPALQTTGVDFSTL
WQFQDALDVRYLYSNNIHAMLTTYGVEAARETIIREIQHVFGSYGISVNMRHLTLIADYM
THSGGYRPMNRLGGIAESISPFCKMSFETASKFIVGAAYHGETDDLETPSARICVGLPVK
MGTGCIDVMQNLEI
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaacccctagagggtactacgaagtctttcgaagcagttaggttcagtttcttt
acagatgaagaggttcgaaagcacagtgttgtgaagattacaaattcaattttgcttgat
agtatggagagaccggtgcctggtggattgtatgatccaaaattgggcccactagatgaa
aggacgctttgcaagacatgtgagcagcgttcattccattgcccaggccattttggtcgc
atagaccttgtttcaccagcctataatcccttgctattcaatattcttcacagtcttctt
cagagtacttgtttcttttgtcaccatttccgagcaagcagaagccaggttgagacatgt
gtttctcaattgaaactcattgtgaaaggtgatgttgttggggccaaaaggttggacttg
gatacatcgagtgaaacctcatatccagatgacatcgatgtgagccagtataccgataag
gagcatttatgtcagcaaggatggacctctcttcagtttactgaagctatgtctgctttg
agaaaatttatgaagccaagatctgtggtttgtaagaactgtgaggccagaaatcctaaa
atcagtaaacctacttttggatggttttatatgagtggtatgtcaggtgccaatgctaga
cggaatgtaattcaagggatcaaggtgggaaggtcattaactggtggaactaatggaaaa
acttctcttgaggtgcaaaacaccagtgatatgactccctggggggatgttgttgatact
gctgaaacagaaacctccagtgctatctcttctgaagctcaagatagtcctgcaagaagg
catagaaaaaaaggaggggaagtgcctcttgagttctttaagcagaaggatttattttcg
ggacctcttttgccatcagaggttaaagatattgtgaagcttctctgggaaaatgagagt
cagctgtgctcatttatcagtgatattcagcagcagggacttcaaatgaaagatgcttac
tctatattcttcttagagactattcttgtacctccaatcaaattccgccccccatccaag
ggaggtgattcggtaatggagcatcctcaaactgttttgttaaataaggtgctacagtcc
aatatatctttgggaaatgcgcatgttaacaacttagaatactcaaagatagtacgccag
tggatggatctccaacaatctataaacgtattgtttgatagcaaaactgccacaggtcaa
ggtcgaagagatgtagcttcaggaatttgtcagttgctggaaaagaaggaaggcatgttc
cgccagaaaatgatgggaaagagggttaattttgcttgccgctctgtcatatccccagat
ccttatttagctgtaaatgaaataggaattcctccatactttgcattaaggttaacctat
cccgagagggtgactccttggaatgttgagaagttgaggaaggctatcatcaatggtcct
gaaatccatcctggagctacacactacgttgataagctagacactaggcaactaccggca
ggccaaagcaaaaacgagcgcgaccgccgcacttcaatatcaagaaaagtatcatcctct
caaggtcttctcacgcaacatgggaaaggctgcgattatgaatttgaaggcaaatttgta
cgtcgccacttgcaagatggggatattgttcttgtcaacagacagccaactcttcacaag
cctagtataatggcacatgtagttcgtgtgttaaagggggaaaaaacaattcgcatgcac
tatgcaaactgcagtacatataatgctgattttgatggtgatgaaatgaatgtacatttc
cctcaagatgaaatttctcgttctgaagcttacaacattgtaaatgcaaataatcaatat
gtcaagcccacaagtggtgagcccattagatccttgattcaggatcatatcattagcgct
gtacttcttacgaagaaggatactttttttaatcgcgatcagttcaaccagcttctttat
tgtgctggcctctctgcatctagtccagcctctttttttggaaaatttggccagaaagtt
tgcatattaaactctgaagatgagatgcaaccccttctgccagcaatatggaaaccagag
cctctttggactgggaaacaggtaattagcgccttgctaaatcatattaccaaaggtcac
cccccattttctgttgaaaaagatgcaaaactcccgcgtgattttttcaagagtagaagt
gatgaagatgaactggacaaagataaactgagtaaagggagaaaggttgacgaagatgca
tcaaagagaaaggagcctgatgaagataaattgttgatatataagaatgacttggtgcgt
ggtgttattgacaaggctcagtttggtgaatatggtttggttcatatggtgcaggagctc
tatggctcaaatactgcaggcatcttgctttctgcgttgagtcgtttatttactaccttt
ctgcagatgcatgcggccacatgtggagtagacgatcttttgctgacggtgaacaaagac
tatgagagggaaaaaaaccttcaagattgtgagaaagttggtgaagatgttcatcttttg
tttgttaatggcaagggtggtgatgaaatagcagatgcagatgttctacgagtgaatatt
gaaaaaaagatacggagtaatggagaatcagccttaacagacttggataggaagatgata
agtaaacttaatgaggaattaagcaagaacttcttcaaggagctgttgtccaaagggtta
tttaagccctcaggaaagaactgtatttctctcatgactacatctggggctaagggtgct
acagtcaatttccagcaaatatcttcccatttaggccaacaagagttagaaggcaaacga
gtccctcgaatggtttctggaaaaactttaccctgcttctctccatgggattgggcagct
cgagctggcggctttattattgatcgctttctctctggtctccaccttcaagaatattac
tttcattgcatggctggtcgtgaagggttggttgacacagcagtgaaaacatctcgcagt
ggatatcttcaaagatgcctaataaaaaatcttgagtgcctaaaaatttgttacgatcat
actgtccgtgatgctgatggttccattgttcaatttcgctatggagaagatggtgtggat
gtccatcaaacaagtttcctggcaaactttgaagcgctagcaccgaatcaagaaataatt
ttcacaaaaagttgtcaagagcttcgcaaatccaatagttacattaaggaattgccttat
gcccttaaagaaaaagcaagggactttgtgcataaattctccttgaagaagagaaatcct
gatattttcaaagaagaggatttcctgaagttagtggagcacaaatacgtcttaagtctt
gcacagcctggggaaccagttggtgtgcttgctgggcagtctgtaggagagccatcgaca
cagatgacgctgaatacgttccatcttgctgggcgaggtgaaatgaatgtgacgcttgga
attccacgtctacaggaaatcttgatgactgcgtcaagtgatattaagacgcctgtgatg
acatgccccttccaactagggagctcaaaggaagatgcctctcgtcttgctgataagttg
aagaagataactgtagcagacattataaagagtatgaaagtatctgtaatgccagctgct
gttcatgaacgccagaattgccgtatttataagcttgagatgatgctttacgtacctgaa
aactatccaaaacacactgatatttcattagaagactgggaggaaagcctaaaggttgtt
tttgtgagagagctggaggacgcgatacaaaatcatctgctcttgctttctaaaattagt
ggcataaaaaatttcatgccagattcgcaatcagatgcttcaaatggaacagatgatgat
gcatctggcaacagatcagaacgccaggaggaaaatgatgatgacgaggatgttgatgat
ggagggtctgaggatcttggtctggatgcacagaagagaaagcagcaagcaacagacgag
atggattatgaggatacttctgatgaggaactaaatgaaggggaactaacagctggctct
gaaagtgaaattgaccaggtagagaatgatattgaagtgagtaaggatgatgtcattggg
gggatgcctgatgcaaaagacaagacatctgaactatcaggacttggaaaatcctctaag
caaaagtcaaagggcaaaaagaaccaaccagaagtcaaaaagaagaagaggtccagagga
aaactagtcaagaaagattatgatagagcatgttttgtgaaagctaagggaatgcacttt
gaggtccattttcggtttatcggcgaaccccatattttactggcccagattgctctaaaa
actgccaagaaggtttacatccagagctttggcaagattgatgggtgtaaaatcatttcg
tgcaaagaaaaacaagtgatatactatggtataaatcccaaagaccggaagagtatctca
ccagcagaaaaagaaaaagttccggctctgcaaaccaccggagtggatttcagtacattg
tggcagttccaggatgctcttgatgtcaggtatttatattccaataacatccatgctatg
ctaaccacttatggagtggaagctgccagagaaactattatcagggaaatacaacacgtt
ttcggttcttacggtatttctgtcaatatgcggcacctaacacttattgctgactatatg
actcattcgggtggctatcgtccgatgaatagacttgggggaatagcagaatcaatatct
cctttttgtaagatgtcttttgagacggcttcaaaattcatcgttggagcagcatatcat
ggggagacagacgatttggagaccccatctgctaggatctgtgttggattgccagtgaag
atgggtactggatgtattgatgtgatgcagaatttggaaatctga
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integrated database retrieval system
