Alnus glutinosa (common alder): 133874707
Help
Entry
133874707 CDS
T10577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
aglu Alnus glutinosa (common alder)
Brite
KEGG Orthology (KO) [BR:
aglu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aglu03400
]
133874707
Enzymes [BR:
aglu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
133874707
DNA repair and recombination proteins [BR:
aglu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
133874707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_30
AAA_19
DEXQc_Suv3
T2SSE
Motif
Other DBs
NCBI-GeneID:
133874707
NCBI-ProteinID:
XP_062168571
LinkDB
All DBs
Position
8:complement(8432988..8481966)
Genome browser
AA seq
2097 aa
AA seq
DB search
MLLQLPRLTSSLRDPFDVDQAYLQRKIILQNHNRPRNSASSLDESELARKIVPRWEEASV
EVRQAYKQFIVAVVELIDGEVPSEEFRVVALAVYRLFGRPGEEDNFDRNIAEKKLELQKL
LGHVVSDANLQRVASLAQKLFGLTPSDHGPPLVSEGLVNGSGNDLEFGADLVFQSPARFL
VNVSLEDGELLGEESTAPSSSSHEGWYEPNETRHYPSTADGGNFNLSWLRDACDRIVRGS
TSQLSRDELAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLVSHRKELVDAIHHGF
LVLKSEKTATNAQSRMPSYGTQVTVQTESERQIDKLRRKEEKRHRRGTEFGTESDLSAAD
FSSLLQASERKSPFDDLIGSGPGSQSLAVTALPQGTVRKHYKGYEEVIIPPTPTAQMKPG
EKLIEIKELDDFAQAAFRGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISIL
HEIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSAFSHRLSPLNMTVRELTGDMQLSKKE
LEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQV
ESTQTMIRIVGLSATLPNYLEVAQFLRVNPEAGLFFFDSSYRPVPLAQQYIGISEQNFAA
RNELLNDICYKKIVDSLRQGHQAMVFVHSRKDTAKTAQKLVEIGRKYDDLELFKNDTHPQ
FSLIKREVVKSRNKDLVELFEYGIGVHHAGMLRTDRGLTERLFSDGLLKVLVCTATLAWG
VNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAY
YLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGI
GWDEVIADPSLSSKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSV
ETYNEMLRRHMNDSEVIDMVAHSSEFENIAVREEEQNELEMLVRTSCPLEIKGGPSNKHG
KISILIQLYISRGWIDTFSLVSDASYISASLARIMRALFEICLRRGWCEMSLFMLEYCKA
VDRQIWPHQHPLRQFDKDISAEICRKLEERGADLDRLQEMEEKDIGALIRYAHGGKLVKQ
YLGYFPWIQLSATVSPITRTVLKVDLLITPDFTWKDRYHGTAERWWILVEDSENDHIYHS
ELFTLTKRVARGQPQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYTISFQNLQLPEAG
TSHTELLDLKPLPLTSLGNSTYEALYKFSHFNPIQTQTFHVLYHSDNNVLLGAPTGSGKT
ISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMNDWKKRLVSQLGKKMVEMTGDYTPDLM
ALLSADIIISTPEKWDGISRNWHSRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYI
SSQTERAVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCP
RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPIQFLNMPEEAL
QMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP
AHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKF
LYEPFPVESSLREQLHVHINAEIVSGTICHMEDAVHYLTWTYLFRRLTVNPAYYGLESTG
PEILSSYLSRLVQNTFEDLEDSGCIKMSDDSVEPMMLGSIASQYYLSYMTVSMFGSNIGP
DTSLEVFLHILSAASEYDELPVRHNEENYNEALSERVQYAVDKNRLDDPHVKANLLFQAH
FSQLELPISDYVTDLKSVLDQSIRIIQAMIDICGNSGWLSSSITCMHLLQMVMQGLWFDK
DSSLWMLPSMNDDLASLLNKKGIFTVQQLLDLPKANLQTVIGTFPASRLYQDLQIFPRVQ
VKLKLQRRDIDGGKASTLNIRLEKINSKWSTTRAFAPRFPKVKDEAWWLLLGNTFTSELY
ALKRVSFSDRLITHMELPSNLTSLQGIKLILVSDCYLGFEQEHPIEHLTEFQQPDGM
NT seq
6294 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttcagcttcctcgcttgaccagctctctgagagaccccttcgacgtcgaccag
gcctatctccaacgcaaaatcatcctacaaaatcataataggcctcgcaattctgcgagc
tcacttgatgagtcagagctagcgcggaagattgtaccccggtgggaagaagcttcggtt
gaagttcgacaagcatacaagcaatttattgtggcagtagtggagttgatcgatggagaa
gtgccttcggaagagtttcgcgtggtggcactcgctgtttatcgtctttttggcaggcca
ggggaggaggacaattttgatagaaatattgccgagaagaagttagaattgcaaaaactt
cttggtcacgtggtttctgatgccaatctgcagagagttgcctccctagctcaaaaactg
tttgggttgacacctagtgatcatgggcctccacttgtgtcagaggggcttgtaaacggg
agtggtaatgatttagaatttggcgctgaccttgtttttcaatcaccagctcgctttctg
gtgaatgtttctttggaggatggagaattattgggtgaggaaagcactgcaccttcttct
tcgtcccatgaaggctggtatgaacctaatgagactcggcattatccttctactgctgat
gggggaaattttaatttgagttggttaagagatgcatgtgatcggatagttaggggaagt
acttcacagctttccagggatgaactggcgatggccatttgtcgtgtgcttgattcagac
aagcctggtgaggagattgctggtgatttattggatcttgttggggatagtgcattcgag
actgttcaagaccttgtgtcgcatcgcaaggaacttgttgatgctatccatcatgggttt
ctggtattgaaatctgaaaaaacggctacaaatgctcaatcacgtatgccaagttatggt
actcaggttacggttcaaacagagtctgaaaggcaaattgataaacttcggcgcaaggag
gaaaaacgacatagacgaggaacagaatttgggactgagagtgacttgtctgctgcagat
ttttcttctttacttcaagcaagtgaaagaaaaagtccgttcgatgatctgattggatct
ggccccgggtcccagtccctagcagttactgctcttcctcaaggaactgtcaggaagcat
tataaggggtatgaggaggtcattatccccccaacaccaactgcacaaatgaaacctgga
gagaaactgattgagataaaggagttagatgactttgctcaagctgcttttcgtggctac
aaatctctgaaccgtattcagagcaggatatttcaaacagtttattatactaatgagaat
atactagtttgtgctccgacaggagctggcaaaacaaatattgctatgatttctattcta
catgagattggacagcacttcaaggacggttacttgcataaagatgagtttaagatagtt
tatgttgctcctatgaaggcattagctgcagaggtaacatcagcatttagccatcgttta
tctccattgaacatgaccgtgagagaacttactggagacatgcaactttctaagaaagaa
cttgaagaaactcagatgatagtgacaacacctgaaaaatgggacgtcattacgcggaag
agcagtgacatgtcactttcaatgctggtgaaactcttaattattgatgaagtgcatctc
ttgaatgatgatagaggccctgtaatagaggcacttgttgctcgtaccctccgtcaggtg
gagtcaacacaaacaatgatacgtattgtggggctttcggctactctaccgaattatttg
gaggtggcacaatttcttagagtgaatccggaggcaggactcttcttctttgattctagc
tatcgtcctgtgcctcttgctcaacagtatattggaatcagtgagcagaactttgcagct
cgtaacgaattgttgaatgacatatgctataaaaagattgttgattcattaaggcaaggt
catcaggcaatggtgtttgttcattcacggaaggacacagcaaaaacagcacagaaattg
gttgaaattggccgaaaatatgatgatctcgagctctttaagaatgatacgcatccacag
tttagcttaatcaagagggaagtagttaagtccagaaacaaagatcttgttgaacttttt
gaatatgggattggtgttcatcatgctgggatgttacgtactgatagaggtctgactgag
cggcttttctctgatggactcttgaaggtactagtttgtacagcaactttggcatggggt
gtaaatcttcctgctcacactgttgtgattaaggggacacaattatatgatccgaaggct
ggtggttggcgagatcttggcatgctagatgttatgcagatctttggacgagctggtaga
cctcagtttgacaaaagtggtgaaggcatcataatcacatctcatgaaaaactagcctac
tatttgcggttgctgacaagtcaactccctattgaaagtcagttcattagctccttgaaa
gataatttaaatgccgaagtagcattgggtacagtcaccaatgttaaggaagcttgtgcg
tggcttggatatacatatctttttataaggatgaggttgaatcctttggcatatggtatt
ggatgggatgaggttattgcagatccttctttaagttcaaagcaaagagctcttgtaaca
gatgctgcacgggcacttgacaaagcaaaaatgatgcggtttgatgagaaaagtggcaat
ttttactgtactgagcttggtcgcattgcaagccacttttatattcaatactctagtgtt
gaaacttacaacgaaatgttgagacgccacatgaatgatagcgaggtaattgacatggtt
gcccactcttctgaatttgaaaatattgctgttcgagaagaggaacagaatgagctagag
atgttggtgcgtacatcatgcccgttagaaattaagggtggtccttcgaataaacatgga
aaaatttccattctcattcagctgtacatatctcgaggctggattgataccttctcattg
gtttctgatgcttcatatataagtgcgagcttagctcgtattatgagggctttatttgaa
atttgtttgcgaagaggctggtgtgagatgtctttgtttatgttagaatattgcaaggct
gtggatcggcaaatttggcctcatcaacatccccttcgacaatttgacaaggatatttcc
gcagaaatatgtcggaagcttgaagaacgaggggctgacctagatcgcctgcaggagatg
gaggaaaaggacatcggagcactgattcgttatgctcatggaggaaagttggttaagcaa
tatttaggatatttcccgtggatccagttatcagcaactgtaagtccaatcaccagaact
gttttgaaggtggatctgctcataacgccagactttacatggaaagatcgttatcatggt
actgcagagcgttggtggattctagttgaggattcggagaatgatcatatctaccactca
gaacttttcactctgacaaagcgggtggctagagggcaacctcagaagctttccttcact
gtaccaatatttgaaccacatccaccccaatactacattcgtgctgtttctgattcttgg
ttgcatgcagaggctttctacaccatttctttccagaatctacaactgccagaggctggt
acttcgcacacagaacttctagatttaaaacctctccctttgacttcactgggaaacagt
acttatgaagccttgtacaagttttcacattttaatcctatacaaacacagactttccat
gtcctgtatcactcagataacaatgtgctcttaggagctcccactggaagtgggaaaacc
atatctgctgagcttgccatgcttcgcctttttaatactcagccggatatgaaggttatt
tatatagcgccattgaaggccattgttcgggaaagaatgaacgattggaaaaagcgtctt
gtctctcagcttgggaagaagatggttgaaatgactggcgattacactccagatttgatg
gctctcttgtcagctgatatcataatatctactcctgagaagtgggatggtatcagtcgt
aattggcatagtcgaagctatgtcatgaaggttggacttatgattttggatgagattcac
ttattgggagctgatcgtggtcctatccttgaggttatcgtttcgaggatgagatacata
tcatcacaaacagagcgtgcagtacggtttgtaggcctgtctacagctttagcaaatgca
ggtgatttggctgattggttgggtgttggggaaatcggactcttcaatttcaagccaagt
gtgaggcctgttcctcttgaagttcatattcagggatatcctggaaagttctactgccca
aggatgaatagcatgaataaaccagcatatgctgcaatatgcacccattcaccgacaaaa
ccagttcttatatttgtttcatctcgtcgtcagacaaggctaactgctctggacctcatt
cagtttgcagcttcggatgaacatccaattcagtttcttaatatgccagaagaagcgctt
cagatggttctttctcaggtcactgatcagaacctaaggcacaccttgcaatttggcatt
gggttacaccacgcgggtctaaatgacaaggacagatctctggttgaggaactttttgca
aacaacaagattcaggtattggtttgtaccagcacattggcatggggtgtgaaccttcca
gctcatctggttattatcaagggaacagaatattatgatggaaaggcaaagagatatgtt
gattttccaatcacagatatattgcaaatgatgggccgagctggccgcccacagtttgat
caacatgggaaagcagtcattcttgttcatgaacccaaaaagagcttctataaaaagttt
ttgtacgaaccatttccagttgagagtagtctgagagagcagttgcatgtgcacatcaat
gcggagatagtttctggcactatttgccatatggaggatgcagtgcattaccttacctgg
acctacttattccgtagactgacagttaatcctgcttattatggcttggagagtacaggt
cctgaaattcttagttcatatttatctaggttagtgcaaaacacatttgaggatctggaa
gacagtggatgtatcaagatgagtgatgacagtgtggagcctatgatgttgggttcaata
gcatcccagtattacctcagctacatgactgtatctatgtttggttcgaatataggtcct
gacacgtcacttgaagtgtttctgcatattctctctgctgcttctgagtatgatgaactt
cctgtgcggcataatgaggaaaattataatgaagcattgtccgagagagttcaatatgcg
gtggataagaatcgccttgatgatccacacgtcaaagcaaatctgctatttcaggcacat
ttttctcaattagaattaccaatcagcgactatgtcacagacttaaagtcagtgttagat
caaagtatacgtatcatccaggccatgatagatatatgtggaaacagcggatggctttca
agctcaataacttgcatgcatcttttgcaaatggtcatgcagggtttatggtttgataag
gattccagcttgtggatgttaccatccatgaatgatgatcttgcaagtttgttgaacaaa
aaaggaattttcactgtgcagcaactgttggatcttcctaaagcaaatttgcagactgta
attggaacctttcctgcttcaagattatatcaggatttgcagatttttccccgtgttcaa
gtgaaattaaaacttcagagaagggacattgatggtggaaaggcttccactttgaacatc
agattggagaagatcaattccaagtggagcacaacaagagcttttgccccccgatttcct
aaggtaaaagatgaagcatggtggttgcttcttggtaacaccttcacctccgagctatat
gctctgaagagagtttctttctctgatcgcttgatcacccacatggagttaccatcgaat
ctgacgagtctccaggggatcaaattgattttagtgtcagattgttatcttggtttcgaa
caagaacatcccatcgaacaccttaccgaatttcagcaaccagacggaatgtga
DBGET
integrated database retrieval system
