Agromyces badenianii: DCE93_03695
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Entry
DCE93_03695 CDS
T05411
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agm
Agromyces badenianii
Pathway
agm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCE93_03695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agm03400
]
DCE93_03695 (mfd)
Enzymes [BR:
agm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCE93_03695 (mfd)
DNA repair and recombination proteins [BR:
agm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DCE93_03695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
IstB_IS21
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AWB94872
UniProt:
A0A2S0WU81
LinkDB
All DBs
Position
768228..771941
Genome browser
AA seq
1237 aa
AA seq
DB search
MNLQGFLTALSRASTVDAALAEALRNADFSAPAGLDAPLLAGLLQRRAEAGLPPALLVIT
ATSREGESLRASLAPYLPGGELLEFPAWETLPHERLSPSAETVGRRLHALRRMHDWAAAG
SQHPLVVVASVRAALQPLADNLASLEPVELVAGGRGYNLAELAVKLVDLAYARVDMVARR
GEFAVRGGILDVFPPTADHPVRVEFFGDEVEELRAFSVADQRSLPDPIERVTLPPSRELL
LTEPVRQRAREMVHEFPSLSALLEKVSEGIPVEGMESLAPALLDRLVPLSHYLPEGAAVA
VLEPERVAGRAVSLGETNREFLGAAWSAATAGADAPIDLAAGDFLTVRQLRDAALFSAPG
EPDPRRVWWNFSGFDIGDAAEVVAAAGGEAAAHVAGASTTVRVAANAMPSFQGNVAGAVD
HAAERLREGWSLVVAAAGHGLVERARDVLAEAGLAARIVDEVPPELEPGVAYLVQADAAH
GYEVPEVKLGLLAEAEFYGRAAGYDARQGKKLASRRRNVVDPLQLKAGDYVVHQTHGIGK
FIEMVQREVATGSRPTGPSRTAGIQQQPTAVREYLVIEYAPSKRGQPGDRLFVPTDQLDL
LSRYVGGEAPSLSKMGGSDWSQTKGRARKAVRDIAVELVKLYSARMASKGHAFGPDTPWQ
HELEEAFPFTETPDQVQTIDEVKADMERSIPMDRLLAGDVGFGKTEVAVRAAFKAIQDGK
QVAMLVPTTLLVKQHLETFSERFAGFPVHVRALSRFQSDKEARETIAGLADGTVDMVIGT
HRILTEKVKFKDVGLVIIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRSLEMAVTGI
REMSTLATPPEDRHPILTFVGPYSEQQVAAAIRREMLREGQVFFVHNRVSSINRAAAQLA
ELVPEARIAVAHGQLNEHVLEQIVVDFWERKFDVLVSTTIIETGLDISNANTIIIDRADK
YGLSQLHQLRGRVGRGRERAYAYFLYDPAKPLSETAHDRLSTIAANNELGSGMQVALKDL
EIRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVSAFRGDVATGQTELRLELPVDAHIPEE
YVDSERLRLEAYQKLSAASGPAAKDGQIDQVLDELVDRYGEPPEQVEHLVAISRLRRLAQ
LAGLSDVIATGSKLRIAPAHIPDSRRVRLERMYPGAKHFAQNDVILVPFPTTNGELPGDA
DLIEWVSRLITAIFPMPEATATDAPAAASSAAVAASD
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
gtgaacctccagggctttctcacggcgctttcgcgcgcctcgaccgtcgatgcagcgctc
gccgaagccctgagaaacgcggacttctcggctcccgcaggactcgacgccccgctcctc
gccggtctgctgcagcgtcgcgccgaagccggccttccgccggcgctgctcgtcatcacc
gccacgagtcgcgagggcgagtcgctgagggcctccctcgcgccgtacctgccgggcggt
gagctgctcgagttccccgcgtgggagacgctgccgcacgagcggctcagcccctcggcc
gagaccgtcggccgccggctgcatgcgctgcggcgcatgcacgactgggcggcggcgggc
tcgcagcatccgctcgtcgtcgtggcctcggtgcgcgcggcgctgcagccgctcgccgac
aacctcgcctcgctcgaaccggtcgagctcgtcgccggcgggcgcggttacaaccttgcc
gagctcgcggtcaagctcgtcgacctcgcatatgcgcgagtcgacatggtcgcccgtcgc
ggtgagttcgccgtgcgcggcggcatcctcgatgtcttcccgcccaccgccgaccacccc
gttcgcgtcgagttcttcggcgacgaggtcgaagagctgcgcgcgttctcggtggccgac
cagcgttcgctgcccgatccgatcgaacgcgtgaccctgccgccgagtcgcgagctgctg
ctcaccgagccggtgcggcagcgggcccgcgagatggtgcacgagttcccgagcctctcg
gcgctgctcgagaaggtgtcggagggcatccccgtcgagggcatggagtcgctcgcgccg
gcgctgctcgaccggctcgtgccgctcagccactatcttcccgagggtgcggccgtggcg
gtgctcgagcccgagcgggtcgccggccgggcggtcagcctcggcgagacgaaccgcgag
ttcctcggcgctgcatggagcgccgcgacggccggcgccgacgcgcccatcgacctcgcg
gccggcgacttcctcactgttcgccagcttcgggatgccgcgctgttcagcgctcccggc
gagcccgatccgcgacgcgtgtggtggaacttctccggcttcgacatcggcgacgcggcc
gaggtggtggccgccgccggcggtgaggccgcggctcacgtcgccggcgcatccacgacc
gtgcgggtcgccgcgaacgcaatgccgagcttccagggcaatgtggccggcgccgtcgac
cacgcggccgaacgcctgcgcgaggggtggagcctcgtcgtggccgccgccggtcacggc
ctcgtcgagcgcgcacgcgacgtgctcgccgaggccgggctcgccgcccgcatcgtcgac
gaggtgccgcccgagctcgagcccggcgtggcgtacctcgtgcaggccgacgccgcgcac
ggctacgaggtgcccgaggtgaagctcggcctgctcgccgaggccgagttctacgggcgc
gcggccggctacgacgcccgccagggcaagaagctcgcgagccgccgccgcaacgtcgtc
gacccgttgcaactgaaggccggcgactacgtcgtgcaccagacgcacggcatcggcaag
ttcatcgaaatggtccagcgcgaggtggccacgggctcgcggcccaccggcccgagccgc
accgccggcattcagcagcagccgaccgcggtgcgcgagtacctcgtgatcgagtacgcc
ccgtcgaaacgcggccagcccggcgaccggctcttcgtaccgaccgaccagctcgacctg
ctctcacggtacgtcggcggcgaggcgccgtcgctctcgaagatgggcggcagcgactgg
tcgcagaccaagggccgtgcgcgcaaggcggtgcgcgacatcgcggtcgagctcgtgaag
ctctattcggcgcgcatggcgtcgaagggccacgcgttcggccccgacaccccgtggcag
cacgagctcgaagaggccttcccgttcaccgagacgcccgaccaggtgcagaccatcgac
gaagtgaaggccgacatggaacggtcgatcccgatggatcgcctgctcgcgggcgacgtc
ggcttcggcaagaccgaggtcgcggtgcgcgcggcgttcaaggcgatccaagacggcaag
caggtcgcgatgctcgtgccgacgaccctgctcgtcaagcagcacctcgagaccttcagc
gagcggttcgcgggcttccccgtgcacgtgcgcgccctcagccgcttccagtccgacaaa
gaggcgcgcgagacgatcgcaggtctggccgacggcacggtcgacatggtcatcggcacg
caccgcatcctcaccgagaaggtgaagttcaaagacgtcggcctcgtcatcatcgatgag
gagcagcgcttcggcgtcgagcacaaagacgctctgaagaagctgaagaccaacgtcgac
atcctcgcgatgagcgcgacgccgatcccgcggtcactcgagatggcggtcacgggcatc
cgcgagatgtcgacgctcgcgacaccgcccgaagaccggcacccgatcctcaccttcgtc
gggccgtactccgagcagcaggtcgccgcggcgatccgccgcgagatgctgcgcgaaggc
caggtcttcttcgtgcacaatcgtgtctcgtcgatcaaccgggccgcggcccagctcgcc
gagctcgtgcccgaggcgcgcatcgcggtggcgcacgggcagctgaacgaacacgtgctc
gagcagatcgtggtcgacttctgggagcgcaagttcgacgtgctcgtctcgacgacgatc
atcgagaccggcctcgacatctcgaacgccaacacgatcatcatcgaccgcgccgacaag
tacgggctctcgcagctgcaccagttgcgcggtcgcgtcggtcgcggccgcgagcgggcg
tacgcgtacttcctctacgatcccgccaagccgctctccgagaccgcccacgaccggctg
tcgacgatcgccgcgaacaacgagctcggcagcggcatgcaggtcgcgctgaaagacctc
gagatccgcggcgccggcaacctgctcggagccgagcaggccggccacatcgcaggcgtc
ggcttcgacctctacctgcgcatgatcggcgaagccgtctcggcgttccgcggcgacgtc
gccaccgggcagaccgagctgcggctcgagctgcccgtcgacgcgcacatccccgaagag
tacgtcgactccgagcggctgcgcctcgaggcgtaccagaagctctcggccgcgagcggg
cccgccgcgaaagacgggcagatcgaccaggtgctcgacgagctcgtcgaccggtacggc
gagccgcccgagcaggtcgagcacctcgttgcgatctcgcggctgcgccgcctggcgcag
ctcgccggcctctccgacgtcatcgccactggctcgaagctgcgcatcgcacccgcgcac
attcccgactcgcgccgggtgcggctcgagcgcatgtaccccggcgccaagcacttcgcc
cagaacgacgtgatcctcgtgcccttcccgacgacgaacggcgaactgccgggcgacgcc
gacctcatcgagtgggtgtcacgactgatcacggcgatcttcccgatgcccgaggcgacg
gcgacggatgccccggcggctgcgtcatccgcggcggtggccgcgagcgactga
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