Agrobacterium tumefaciens H13-3: AGROH133_07595
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Entry
AGROH133_07595 CDS
T01432
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
agr
Agrobacterium tumefaciens H13-3
Pathway
agr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
agr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AGROH133_07595 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agr03021
]
AGROH133_07595 (rpoD)
Transcription machinery [BR:
agr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AGROH133_07595 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
DUF4350_C
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
ADY65072
LinkDB
All DBs
Position
circular:complement(2086616..2088670)
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AA seq
684 aa
AA seq
DB search
MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEDAEEAPGEAESDDSDNEESEGGELAPSGGTALATAKKKE
PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRD
ELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRLRAPSGDED
VTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEA
RLACTGTLSSGQERRYKDLKDQLITAVKSLSLNQNRVDSLVEQLYDISKRLMQNEGRLLR
LAESYGVKRDSFLEQYHGAELDPNWMKSIANLAARGWKEFAREESNTIREIRQEIQNLST
ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaagtcaaagaaaacgaagaagcagaaaacgaacgcgacggtgcgacggac
ggtccgcttctcgatctttcggatgacgcggtcaaaaagatgatcaaggccgccaagaag
cgcggctatgtgacgatggacgagctgaattccgtcctgccgtccgaagaagtgacgtcc
gagcagatcgaagacacgatggcgatgctgtccgatatgggcatcaacgttattgaggac
gaggatgccgaggaagcgccgggcgaagccgaaagcgacgattccgataacgaagagtcc
gaaggcggcgaactggcaccttccggcggtaccgcgcttgcgaccgcgaagaaaaaagaa
ccgaccgaccgtaccgacgatcctgtgcgcatgtatctgcgcgaaatgggttccgtagag
cttctgtcgcgcgaaggcgaaatcgccatcgccaagcgcatcgaggccggccgcgaaacg
atgatctccggcctttgcgaaagcccgttgacgttccaggcgctgatcatctggcgcgac
gaactcaacgaaggcacgacgctgctgcgcgagattatcgatctcgaaaccacttattcc
ggcccggaagccaaggctgccccgcagttccagagcccggaaaagatcgaggcggaccgc
aaggccgccgaagagaaggaaaagacccgcagactgcgtgcgccctccggtgacgaggat
gtgactgatgtgggtggcgatggcctgccgccggaagaggaagaagaggacgacgacgag
tccaacctttcgcttgctgcgatggaagccgagttgcgtccgcaggtcatggaaacgctc
gacaccattgccgacacctacaagaagctgcgcaagcttcaggaccagcaggtcgaggct
cgccttgcctgcacgggaaccctgtcctccggtcaggagcgccgctacaaggatctcaag
gaccagttgatcacggctgtgaagtcgctgtcgctgaaccagaaccgtgtcgacagcctt
gtcgagcagctttacgatatttccaagcgtctgatgcagaacgaaggccggctgctgcgc
cttgccgaatcctatggcgtcaagcgcgacagcttcctcgagcagtatcacggtgcggaa
ctcgatccgaactggatgaagtcgattgccaatctggccgcccgcggctggaaggaattc
gcccgcgaggaaagcaacacgatccgcgagatccgtcaggaaatccagaatctgtcgacg
gaaaccggtatttccatcgccgaattccgtcgtatcgtttccatggtacagaagggtgag
cgcgaagcgcgtatcgccaagaaggagatggtcgaggccaacctgcgtctcgtgatctcc
atcgccaagaaatacaccaaccgcggcctgcagttcctcgatctcattcaggaaggcaat
attggcctgatgaaggcggtggacaagttcgaatatcgccgtggttacaagttctcgacc
tatgcgacatggtggatcagacaggcgatcacccgttcgatcgccgaccaggcgcgcacg
atccgtattccggttcacatgatcgagacgatcaacaagatcgttcgcacctcgcgccag
atgctgcacgagatcggccgcgagccgaccccggaagagctggcggaaaagctggcgatg
ccgcttgaaaaggtgcgcaaggttctgaaaatcgccaaggagccgatttcgctcgaaacc
cctgtgggtgacgaagaggattcgcatctcggcgacttcatcgaggacaagaacgcgctg
ctgcctatcgacgccgccattcaggccaacttgcgcgagacgacgacccgcgttctcgcc
tcgctgacgccgcgtgaagaacgtgttctgcgcatgcgtttcggcatcggcatgaacacc
gaccatacgctggaagaagtcggccagcagttctcggttacgcgcgaacgtattcgccag
atcgaggcgaaggcactgcgcaagctgaagcatccgagccgctccagaaagctcagaagc
ttcctcgacagctaa
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integrated database retrieval system
