Actinomadura graeca: AGRA3207_004856
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Entry
AGRA3207_004856 CDS
T07938
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
agra
Actinomadura graeca
Pathway
agra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
agra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AGRA3207_004856 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agra03021
]
AGRA3207_004856 (rpoB)
03400 DNA repair and recombination proteins [BR:
agra03400
]
AGRA3207_004856 (rpoB)
Enzymes [BR:
agra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AGRA3207_004856 (rpoB)
Transcription machinery [BR:
agra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AGRA3207_004856 (rpoB)
DNA repair and recombination proteins [BR:
agra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AGRA3207_004856 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QXJ23666
UniProt:
A0ABX8QZA2
LinkDB
All DBs
Position
5481606..5485073
Genome browser
AA seq
1155 aa
AA seq
DB search
MAASRNASNTATGPNRVSFARIKEPLEVPDLLALQTNSFDWLLGNERWKARVEAAQKAGS
KSVPTQSGLEEIFEEISPIEDFSGTMSLSFRDHRFEPPKYSVEECKDKDMTYSAPMFVTA
EFINNTTGEIKSQTVFMGDFPLMTPKGTFIINGTERVVVSQLVRSPGVYFDRALDKASDK
DIYGCRVIPSRGAWLEFEIDKRDNVGVRIDRKRKQPVTVLLKALGWDEARIRERFGSYES
INVTLEKDHTSGQDDALLDIYRKLRPGEPPTRESAQTLLENLYFNPKRYDVAKVGRYKIN
KKLGLDLDMNQGTLTEDDIVSTIEYLVRLHAGEEEATLGAVAVPIEVDDIDHFGNRRLRT
VGELIQNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFM
DQTNPLAGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSL
AAFGRVNPFGFVETPYRKVTDGVVTDQIDYLTADEEDRYVIAQANSLLNDDGTFVEDKVL
IRKKGGEVELIAPRDVQYMDVSARQMTSVATAMIPFLEHDDANRALMGSNMQRQSVPLLR
SEAPLVGTGMEYRAATDAGDVITAEKAGVVEEVSADYVTVMNDDGTRTTYRVAKFKRSNQ
GTCFNQKPIVDEGRRVEAGQVIADGPCTDDGEMALGKNLLVAFMPWEGHNYEDAIILSQR
LVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGADVVPGD
ILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEQGKVIGVRVFSRDEGDE
LPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVISKVLPVEDMPFLEDGTPVDIVLNPL
GVPGRMNVGQVLETHLGWVASRGWKVEGDDADWKKALKAIGADEAPAWTNTATPVFDGAR
EDDVTGLIESTLPNRDGNRMVGPGGKAKLFDGRTGEPYKDPISVGYIYILKLLHLVDDKI
HARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVLGRVK
VYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEEL
GIDLSRREPSSVEEV
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcctcgcgcaacgcctcgaataccgcaaccggtccgaaccgcgtctccttcgcg
cgcatcaaggagccgctcgaagtcccggacctccttgcgctgcagaccaactcctttgac
tggctgctgggcaacgagaggtggaaggcccgggtcgaggcggcccagaaggccggaagt
aagagcgtcccgacgcagtcggggctggaggagatcttcgaagagatcagcccgatcgag
gacttctccgggaccatgtccctgtcgttccgcgaccaccggttcgagccgcccaagtac
tccgtggaggagtgcaaggacaaggacatgacctactccgccccgatgttcgtcacggcg
gagttcatcaacaacaccaccggtgagatcaagagccagacggtcttcatgggcgacttc
ccgctcatgacccccaagggcaccttcatcatcaacggcaccgaacgcgtggtcgtctcg
cagctggtccgctcgcccggcgtgtacttcgaccgtgcgctcgacaaggcgtccgacaag
gacatctacgggtgccgggtcatcccctcgcggggggcgtggctggagttcgagatcgac
aagcgcgacaacgtgggcgtgcggatcgaccgcaagcgcaagcagccggtgacggtgctg
ctgaaggcgctggggtgggacgaggcgcgcatccgcgagcggttcgggtcgtatgagtcg
atcaatgtcacgctggagaaggaccacacctccggccaggacgacgcgctgctggacatc
taccgcaagctgcgccccggtgagccgccgacgcgggagtcggcgcagacgctgctggag
aacctgtacttcaaccccaagcggtacgacgtcgccaaggtcggccgctacaagatcaac
aagaagctcggcctggacctggacatgaaccagggcaccctgaccgaggacgacatcgtc
tccaccatcgagtacctcgtgcggctgcacgccggcgaggaggaggcgacgctgggcgcg
gtggcggtgccgatcgaggtcgatgacatcgaccacttcggcaaccggcggctgcggacg
gtcggggagctgatccagaaccaggtccggctgggcctggcgcggatggagcgggtggtc
cgggagcggatgaccacccaggacgtcgaggcgatcacgccgcagaccctgatcaacatc
cggccggtcgtcgcctccatcaaggagttcttcggcaccagccagctgtcgcagttcatg
gaccagaccaacccgctggccgggctgacccacaagcgccggctgtcggcgctggggccg
ggcggcctgtcgcgtgagcgggcgggcatggaggtccgtgacgtccacccctcgcactac
ggccggatgtgcccgatcgagacgccggaaggccccaacatcgggctgatcggctcgctg
gcggccttcgggcgcgtcaacccgttcgggttcgtcgagacgccgtaccgcaaggtcacc
gacggtgtcgtgaccgaccagatcgactacctcaccgccgacgaggaggaccgttacgtc
atcgcgcaggccaactccctgctcaacgacgacggcaccttcgtcgaggacaaggtcctc
atccgcaagaagggcggtgaggtcgagctgatcgcgccgcgggacgtgcagtacatggac
gtctcggcgcggcagatgacctcggtcgcgaccgcgatgatcccgttcctggagcacgat
gacgccaaccgggcgctgatgggctcgaacatgcagcggcagtcggtgccgctgctgcgc
agcgaggcgccgctggtgggcaccgggatggagtaccgggcggccaccgatgccggtgac
gtcatcaccgccgagaaggccggggtggtggaggaggtctcggccgactacgtcacggtg
atgaacgacgatgggacccgcaccacctaccgggtggccaagttcaagcggtccaaccag
ggcacctgcttcaaccagaagccgatcgtggacgagggccggcgggtggaggccgggcag
gtcatcgccgatgggccgtgcaccgatgacggtgagatggcgctgggcaagaacctgctg
gtggcgttcatgccgtgggagggccacaactacgaggacgccatcatcctgtcgcagcgg
ctggtgcaagacgatgtgctgtcctcgatccacatcgaggagcacgaggtcgatgcccgc
gacaccaagctggggcccgaggagatcacccgggacatccccaatgtctccgaggaggtg
ctggccgatctggacgagcgcgggatcatccggatcggcgccgatgtggtgcccggggac
atcctggtgggcaaggtcacgcccaagggcgagaccgagctgacgcccgaggagcggctg
ctgcgggcgatcttcggtgagaaggcgcgggaggtgcgcgacacctcgctgaaggtgccc
cacggtgagcagggcaaggtcatcggggtgcgggtgttctcccgggacgagggtgatgag
ctgccgccgggggtcaacgagctggtccgggtgtacgtggcgcaaaagcgcaagatcacc
gatggggacaagctcgcgggccggcacggcaacaagggcgtcatctccaaggtcctgccg
gtggaggacatgccgttcctggaggacggcaccccggtcgacatcgtgctcaacccgctg
ggcgtgcccggccgcatgaacgtcggccaggtcctggagacccacctcggatgggtcgcc
tcccgcggctggaaggtcgagggcgacgacgccgactggaagaaggccctcaaggccatc
ggcgccgatgaggccccggcctggacgaacaccgcgacgccggtgttcgacggtgcccgc
gaggacgacgtcaccggcctgatcgagagcacgctgccgaaccgcgacggcaaccgcatg
gtcggccccgggggcaaggccaagctgttcgacggccgcaccggcgagccgtacaaggac
ccgatctcggtcggctacatctacatcctcaagctgctccacctggtcgacgacaagatc
cacgcccgctcgaccggcccgtactccatgatcacccagcagccgctcggcggtaaggcc
cagttcggcggccagcgcttcggtgagatggaggtctgggcgctggaggcctacggcgcc
gcctacgccctgcaggagctgctgaccatcaagtccgacgacgtccttggccgcgtgaag
gtctacgaggccatcgtcaagggcgagaacatccccgagcccggcattcccgagtccttc
aaggtgctcatcaaggagatgcagtcgctgtgcctcaacgtcgaggtcctctccagcgac
ggcatgtccatcgagatgcgcgacaccgacgaggacgtcttccgcgccgcggaggagctc
ggcatcgacctgtcccggcgtgagccgagcagtgtcgaagaggtctga
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