Apium graveolens (celery): 141693838
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Entry
141693838 CDS
T11340
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
agrv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141693838
09123 Folding, sorting and degradation
03018 RNA degradation
141693838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141693838
03041 Spliceosome [BR:
agrv03041
]
141693838
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141693838
mRNA degradation factors
5'-3' decay
Lsm complex
141693838
Spliceosome [BR:
agrv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
141693838
Complex C
U2 snRNP components
141693838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
141693838
NCBI-ProteinID:
XP_074355114
LinkDB
All DBs
Position
10:137386935..137390392
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDIDLLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttttcatactttaaagatttagttggtcgtgaggtaaccgtagaattgaag
aatgatttagcaattagagggacccttcattctgttgatcaatatttaaacatcaagctg
gagaatactagggttgttgatcaagataagtaccctcatatgctttcagtgaggaactgt
ttcattcgaggatctgttgtaagatatgtccagttaccacctgaaggagtggacattgac
ctactacatgatgccacacgaagagaagctcgtggtggctaa
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