KEGG   Apium graveolens (celery): 141693838
Entry
141693838         CDS       T11340                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
agrv  Apium graveolens (celery)
Pathway
agrv03018  RNA degradation
agrv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:agrv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    141693838
  09123 Folding, sorting and degradation
   03018 RNA degradation
    141693838
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:agrv03019]
    141693838
   03041 Spliceosome [BR:agrv03041]
    141693838
Messenger RNA biogenesis [BR:agrv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     141693838
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     141693838
Spliceosome [BR:agrv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    141693838
 Complex C
  U2 snRNP components
    141693838
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 141693838
NCBI-ProteinID: XP_074355114
LinkDB
Position
10:137386935..137390392
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDIDLLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttttcatactttaaagatttagttggtcgtgaggtaaccgtagaattgaag
aatgatttagcaattagagggacccttcattctgttgatcaatatttaaacatcaagctg
gagaatactagggttgttgatcaagataagtaccctcatatgctttcagtgaggaactgt
ttcattcgaggatctgttgtaagatatgtccagttaccacctgaaggagtggacattgac
ctactacatgatgccacacgaagagaagctcgtggtggctaa

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