Apium graveolens (celery): 141696836
Help
Entry
141696836 CDS
T11340
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141696836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141696836
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
141696836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_14
TPR_CcmH_CycH
TPR_19
TPR_8
TPR_16
TPR_12
TPR_9
ARM_TT21_C
TPR_15
BTAD
TPR_NPHP3
TPR_7
Motif
Other DBs
NCBI-GeneID:
141696836
NCBI-ProteinID:
XP_074357060
LinkDB
All DBs
Position
11:complement(19446878..19468542)
Genome browser
AA seq
1173 aa
AA seq
DB search
MEETEDSVLIQLQQSVHSNPDDSSLHFNLAAYLWGTSTDIKTIKEKAAEHFVISAKLNPL
NPDAFRYLGDYYSQVCLDSARALKCYQRALSLSPNDSYIGGSICDMLDKQGKESLEIAVC
RDVSEKSPRAFWAFRRLGFLQVHQKKYSESVQSLQHAIRGYPTSADLWEALGLAYQQLGM
LTAAIKSYGRAIELEDSRVFALIESGNIFLMLGSFTKGVQQFHEALCISPKNVAAHYGLA
SGLLSLSKECINLGAFKWGASLLEEASGIAKASTYLAGSISSIWKLHGDIQLTYAKCYPW
MDEYQGLQDDATAFRNSVLSWQKVCFSAAVSASRSYQRALHLAPWQANIYIDIGIAVDAI
CSLKEDEKHNLHALQLPEKMTLGGLFLEGYNNEFWVALGCLSLDAALKQHAFIRSLQLDV
SLAAAWAYLGKLYRKEGDKQLAQEAFDRARSIDPSLALPWAGMSADFYTRDIKVDEAYEC
CLRAVQIMPIADYQIGLANLALLSSNLSSSQVFGAVRQALQRAPHYPESYNLNGLVYEAR
HDYQTAAVFYRLAQCAICALGRGSNSSLRDISTNLARSLCKAGNAVDAVVECEYLKKEGL
LDSKGLQIYAYSLWQLGKNDLVLAAVRTLASSVLLLEKTSVAGCISFICRLLYYVSGQES
AIKSITKMPKDLFQSSKVSFVVSSIHAVDRHNQLDSVVSSSRCFLTSPEEITGMHFLIAL
GKLVKHGSENCLGIQNGVNHLKKTLHMYPNSGLIRNLLSYLLLCSREWNDIHVATRCFVL
CASDCQKEENFKSPFEILGAGAVACYNSGNRNDKLSLPTCRGSCLSGQEAIQQLQKWLRQ
EPWNRNARYLLILNYLQKARLERFPRHLCILLERLISVALSDDLHSKEDQYQKFQLLLCF
SEICLQGKDYTRCITHAKNASEISLPDSYLFFAHLLLCRAYAAKGNFSSLNAEFTRCLEL
KTNYHIGWVGLKCMESRYRLQNVSPKIELNFEECSEEIKYSWHMWMAVYNLVQGLIAIWS
QDFLQAEEFLSQACSFASDESCIFLCHGAICMELAKLQCNSQFLSVALKSLKRAKGTSPT
PLPVVSLLLAQVEGSFGFQTKWENNLRLEWFSWPPELRPPELFMQMHLLSKKLTASDLTT
AVEFRKSSLRWILQAIHMNPSCFRYRTVLEMFM
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaacagaagactcggtattgatacaattgcaacaatctgtacactctaatcca
gatgattcctcccttcactttaatctcgctgcatatctatggggaactagcacggatatt
aaaactattaaggagaaagctgccgagcattttgtgatttccgctaagcttaatccgctt
aatcctgatgcatttaggtatttgggggattattatagccaagtttgcctcgactctgcc
agagctctcaaatgttatcagagagccctctccctttccccaaatgattcctatatcggg
gggtccatatgtgatatgttggacaaacaaggcaaggaaagcttagaaatcgccgtctgt
cgtgacgtttcggagaagtcaccgagggccttttgggctttccgacgacttggttttctt
caggtccatcaaaagaaatattctgaatctgtacaaagtctacagcatgcaattcgcggc
tatcctacctctgctgatttgtgggaagcattgggacttgcataccagcaactgggaatg
ttaactgctgctattaagtcatatgggcgagcaatagagttggaggactcgagagtgttt
gcactaattgaaagtggaaacatcttcttgatgcttggttccttcacaaagggagttcag
caatttcatgaggctttatgcatctcacccaaaaatgtggctgcacactatgggcttgct
tctggactgcttagtctgtcgaaagaatgtattaatttaggcgcgtttaagtggggagct
tcacttttagaggaggcatctggaattgcaaaggcaagtacttacttagcgggaagtatt
tctagtatttggaagttgcatggggatatacagcttacatacgcgaaatgctatccatgg
atggatgaataccaaggactacaagatgatgcaacagctttcagaaattcagtcctttca
tggcaaaaagtctgcttttctgctgcagtatcggccagtcgttcctatcagcgagctttg
cacttggctccatggcaggctaacatttatatcgacataggtattgctgtagatgccatc
tgctcattgaaggaggatgaaaagcacaacctacatgcattacagctacctgaaaagatg
accttggggggtttatttctagagggttacaataatgagttctgggtggccttaggatgt
ttgtcacttgatgcagctttgaaacaacatgctttcatacgttcattacagttagatgta
tctcttgctgctgcatgggcatatctagggaagctttacagaaaggagggtgataaacaa
ttggcccaagaagcctttgatcgagctagaagcatagatccttcactagcattaccttgg
gcaggcatgtcagcagatttttataccagggacattaaggtggacgaagcttatgagtgc
tgtttacgagctgtgcagataatgccaattgcagattatcaaataggtcttgcgaatctt
gctctgctgtctagtaatctttcatcttcacaggtctttggagccgtccgtcaggccttg
cagcgagcacctcactatcctgaatcctacaatttgaatgggctagtctatgaggcacgg
catgattatcagaccgctgccgtcttttataggttagcacaatgtgcaatatgtgcatta
ggcagaggatcaaattctagtctcagagatatatcaaccaatttagctagatctctttgt
aaggcagggaatgctgtggatgcagtagtagaatgtgaatatctaaagaaagaaggtcta
cttgactccaaaggtctgcagatatatgcatattcattatggcaacttgggaagaatgat
ctggttctggctgctgtgagaactttagcttctagtgttctgttacttgaaaagacatct
gtagccggatgtataagcttcatatgtagattactgtactatgtttctggacaagaatct
gcgattaaaagcataacaaaaatgcccaaagatttgtttcagagttcaaaagttagcttt
gtggtatcttccatacatgctgtagatcgacataaccagctagattcggtcgtttcaagt
agccgatgttttcttacatcacctgaagagatcactggaatgcatttcctaatagctctt
ggtaaattagttaaacatggatcagaaaattgccttgggattcaaaatggagtgaatcat
cttaagaaaacccttcatatgtatcctaacagtggattgataaggaatcttcttagttat
ttgctactatgcagtagagagtggaatgatattcatgtcgcaactaggtgttttgtttta
tgcgcttctgattgtcaaaaagaagagaattttaaatctccatttgagattcttggtgct
ggagcagttgcttgctacaatagtgggaatcgtaatgataaactttcactcccaacatgt
cgaggcagttgtctgtccggacaggaagctatccagcagctgcaaaagtggttacgtcaa
gagccatggaacagaaatgccaggtacctattgatactaaactatctacagaaggcacgt
ctggagaggtttccccgtcacctctgtattttgcttgagcgtctcattagtgtggctctt
tctgatgatttacactcgaaagaagatcagtaccaaaagttccaactactactatgtttt
tctgagatttgtctgcaaggaaaagactatactagatgtattacccatgctaaaaatgct
tcagaaatttcgcttcctgatagctatctcttctttgcacatttgttattatgtcgggcc
tatgctgcgaaaggaaatttttcgagccttaatgcagagttcacaagatgtttggagcta
aaaaccaattatcatattggttgggttggtctgaaatgtatggaatctcgatacaggcta
caaaatgtttcacctaaaatagagttgaattttgaagaatgttctgaagaaattaaatac
tcgtggcacatgtggatggcagtatataatttggtgcaaggactaattgctatttggtcg
caagattttcttcaagcagaagagtttctctcacaggcttgttcatttgcaagtgatgaa
agttgcatttttctctgtcatggtgctatctgtatggagcttgccaagttgcaatgtaat
tcacagtttctctcagttgctcttaaaagtctcaaaagagctaaagggacttctccaacg
cccttgcctgttgtttcacttttgctggcacaagtggaaggaagcttcggatttcaaact
aagtgggagaacaacctccggcttgaatggttttcatggccaccagagttgaggcctcct
gagctctttatgcagatgcatttactatccaaaaagttgacggcttctgatttgacaaca
gctgtggagttccgtaagagttcactaagatggattcttcaagcaatacacatgaatcct
tcctgtttcagatatcggacagttttggagatgtttatgtaa
DBGET
integrated database retrieval system
