Apium graveolens (celery): 141709087
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Entry
141709087 CDS
T11340
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
agrv Apium graveolens (celery)
Pathway
agrv03020
RNA polymerase
agrv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
141709087
09124 Replication and repair
03420 Nucleotide excision repair
141709087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
agrv03021
]
141709087
03400 DNA repair and recombination proteins [BR:
agrv03400
]
141709087
Enzymes [BR:
agrv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
141709087
Transcription machinery [BR:
agrv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
141709087
DNA repair and recombination proteins [BR:
agrv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
141709087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
RecQ-1-like_HTH
Motif
Other DBs
NCBI-GeneID:
141709087
NCBI-ProteinID:
XP_074369088
LinkDB
All DBs
Position
2:complement(320986566..320995542)
Genome browser
AA seq
1843 aa
AA seq
DB search
MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK
FKQAQKIRNPKNRLKKILDSCKSKTKCEGGDEIESQSQDTDEPVKKSRGGCGAQQPKITI
EGMKMIAEYKIQKKRNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAKNAVKELIRSAQDKDL
EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKNEFDKVFRYEIDDGNWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ
LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVESVDKLQERLKVVP
GEDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI
DPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENNGFVT
EPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMDGLDFGMTPARSPISGTP
YHDGMMSPNYMLSPNLRLSPITDAQFSPYVGGMGFSPTSSPSYSPLSPGYSPASPGYSPA
SPGYSPASPGYSPSSPGYSPSSPTYSPSSPGYSPSSPTYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPSSAKYS
PSLAYSPSSPRLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNNSGASPD
YSPSSPQYSPSAGYSPSAPGYSPSSTSQYTQGSNKKSNKENGK
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgatttccattttctccggctgaggttgccaaagttcgtatggtccagttc
ggcatactcagtcccgatgagattagacaaatgtcagttgtgcatatcgagcacggtgag
acgacagagagagggaagccgaaaccgagtggattaagtgacccgaggcttggaactatt
gatcgaaaaatgaagtgtgagacttgtatggctaatatggccgagtgtcctgggcatttc
ggtcacttggagcttgccaaaccgatgtttcacattggttttcttaagactgtgctcagt
attatgcgttgcgtttgctttaattgctccaaaatcctcgcggatgaggaggattataaa
tttaaacaagctcagaaaatcaggaatccaaaaaataggcttaaaaagattttagattcc
tgcaagagcaaaactaaatgtgagggtggtgacgagatagagtcccaaagccaggatact
gatgaaccagttaagaagagtaggggaggttgtggtgctcaacagccaaagattactatt
gaaggtatgaaaatgattgccgaatacaagattcagaaaaagagaaatgacgatccagaa
cagcttcctgagcctgttgaaaggaaacaacagctttcagctgagagggtgctaaatgtg
ctcaagcggataagtgatgaagattgcatgttactgggcttaaatccgaagtacgcacgt
ccggactggatgatcctgcaagttcttccaattcctcctcctcctgttagaccttctgta
atgatggatacttctgctcggagtgaggatgatctgactcatcagctggctatgattatc
agacacaatgagaatctaagaaagcaggagaggaatggagctccagctcacataatttct
gaatttgctcaactgttgcagttccatgttgctacatattttgacaatgagcttcctgga
cagcccagggctacacagaggtcagggcggccaatcaaatccatttgcagtaggctcaaa
gctaaggagggtcgtatcagaggaaatttgatggggaagcgtgtggatttctctgcacga
acagttatcactccagatccaactatcaatatcgatcaacttggagttccatggagtata
gctctgaatttaacttatccggagactgtaaccccttacaacattgaaaggctgaaggaa
ctcgttgagtatggtcctcatcctcctcctggcaaaactggtgccaaatacattattagg
gaagatggtcagaggctcgatctccgctatttgaagaaaagcagtgatcatcatttagaa
cttggatacaaggttgagcgacacttgaatgatggagacttcgttttgtttaatcggcaa
ccaagtcttcacaaaatgtctatcatggggcatcgtatcaaaatcatgccgtattcaacc
ttccggttgaatctgtcggtcacttcgccgtacaatgctgattttgatggagatgaaatg
aacatgcatgttccccagtcatttgaaaccagggcagaagttctagagttgatgatggta
cccaaatgcattgtgtctccacaagcaaatcgaccagttatgggtatagtgcaggataca
ctcttagggtgtcgaaagataactaagagagatacctttattgagaaggacgtctttatg
aacatcctcatgtggtgggaggattttgatggaaaagtacctgcacctgccatactgaag
cctagaccgctttggacgggaaagcaagtgtttaatcttatcatccccaagcagataaat
cttatgaggcaatcagcttggcatgctgatggtgaaactggacatataacaccaggagat
actcaggttcgaatagaaaagggggaagtcattactggcacgctttgcaagaagacccta
ggagcttctaccggaagtcttatccatgtcatttgggaggaagttggcccagatgctgct
cgtaaattcctgggacacacccagtggcttgtcaactactggcttctgcagcagggtttc
agcattggtataggagatactatagcggatgctgcgactatggaaaaaattaatgaaact
atctctactgctaagaatgcagtgaaagaattgattagatcagcacaagataaggattta
gaaccagagcctggtcgtactatgatggaatcatttgagaacaaagttaatcaggtcttg
aacaaagctcgagatgatgctgggagcagtgctgagaagagtttgtcggagagtaacaat
ctgaaggcaatggttacagctgggtctaaaggaagttttattaatatatcacaaatgact
gcttgtgtgggacagcagaatgttgaggggaagcgaattccatatggattcattgatcga
actcttcctcatttcaccaaggatgattatggacctgaaagtcgtggtttcgtggagaat
tcttatctacgagggttaaccccacaagagttctttttccatgctatgggaggtcgagaa
gggttgatagatactgcagtcaagacatctgagacgggttatatccaaaggcggctagta
aaggctatggaagatattatggtcaagtatgatggtactgtcaggaattcactaggggat
gtgatccagtttctctatggggaggatggcatggacgctgtttggattgagtctcagaaa
ctggactcccttaaaatgaagaaaaatgaatttgacaaggttttcaggtatgagattgat
gatggaaattggaatccaagttatatgcttccagaacacgtagaggatttaaaaacaatt
cgagagttccgtaatgtgtttgatgctgaagtccagaagcttgaagcagacagattccag
cttggaacagagatcacaacaactggtgataacacctggcctatgcccgtgaatcttaag
aggcttatttggaatgcgcagaagacttttaaggttgatttgagaagaccttctgatatg
catccaatggagattgtcgaatctgttgataagcttcaggaaagattaaaggttgttcct
ggtgaagatttgatgagcatggaagctcagaaaaacgcaaccctcttttttaatattctt
cttcgcagtacattcgcaagcaagagagttttgaaagagtatagacttactcgggaggcg
tttgaatgggtcattggggagatagaatcacgttttttgcagtccctcgtagccccagga
gaaatgattggctgtgttgctgcccagtctattggtgagcctgctactcaaatgactctc
aacacttttcactatgctggtgtgagtgccaagaatgtgactcttggtgttccaaggttg
cgggaaattattaatgttgcgaaaaagattaaaactccatcactatctgtttacttgaag
ccaaacgttagctcttcaaaagagaaggccaagaatgtacaatgtgctttggagtatacc
actttgcgaagtgtgacacaagctactgaagtatggtatgatccagatcccatgagtacc
atcatagaggaggatgttgattttgtcaaatcgtattatgaaatgcctgatgaagaaatt
gatccagataaaatttctccttggctactccgggtgcagttgaaccgggaaatgatgatt
gacaagaagttaagcatggctgatattgccgagaagatcaatcttgaatttgatgatgat
ctaacctgcatattcaatgatgataacgctgataagctgattcttcgaatacgcataatg
aatgatgaggctcctaaaggcgagttgcaagacgaatccgcagaagatgatgtttttctc
aagaaaatcgagagcaatatgctgacagaaatggccctacgtggcatacctgacattaac
aaggttttcattaaacagcagaaaacaaacagatttgatgaaaataatggattcgtgact
gagcccgagtggatgctagacactgaaggggttaatctcttggctgtaatttgtcatgaa
gaagttgacgcgcgtaggacgactagcaatcacttaattgaagtgattgaagttcttgga
attgaagcagttcgccgatccttactggatgagctgcgagtggttatatcttttgatgga
tcttatgtgaactacaggcacttggctatcctctgcgataccatgacataccgtggtcac
ctgatggccatcactcgtcatggcattaaccggaatgacacaggtcctatgatgagatgc
tcatttgaggaaacagttgacattctccttgatgctgctgtttatgcagaaactgattac
ctgcgaggtgttactgaaaatattatgttgggtcaactggcgccaattggtactggagac
tgttctttgtatttgaacgaaaaaatgttgcaacaagccattgacattcagcttcctagc
tacatggatggtctggacttcggcatgaccccagcccgatcgccaatctcggggacccca
tatcatgatgggatgatgtcaccaaattatatgctaagcccaaacctccggttgtcgccc
attaccgatgctcagttttctccttacgttggtggcatgggattctctccaacatcttct
ccaagttatagcccactttctccaggttatagccctgcctctcctgggtatagccctgcc
tctcctggctatagccctgcttctcctggctatagcccatcgtcacctggttatagcccc
agctcgcctacatatagcccaagctcgccaggatatagtcctagtagccctacatattct
ccaacaagtccatcctacagccccacctcccccagctacagccccacatcccccagctac
agccccacctctcccagctacagcccgacctcacctgcctacagcccgacctcacctgcc
tacagccccacctctccgtcctacagccccacctctccgtcctacagccccacctcaccc
tcgtacagccccacctctccatcctacagccccacctctccgtcctacagccccagctcc
ccctcctacagcccaacgtcaccttcatacagcccaacctcaccttcatacagcccaact
tccccatcatacagtcccacatctcctgcctacagtcccacatcaccaagctacagtccc
acatctcctagctacagtccgacatctccaagctacaacccttcatctgcaaagtacagc
ccttccctggcttattcgccaagcagtccaagattatcaccatccagcccatacagtccg
acatcccccagttacagcccaacgtcaccttcatattctcctacatctccatcttattcc
ccttcaagtccaacatacagccctagcagtccttacaataattctggtgctagcccagac
tatagtccaagttcaccacagtacagtccaagtgctggatactctccgagcgcacctgga
tattcaccatcttcaaccagccagtatactcaggggagcaacaaaaagagcaacaaggaa
aatgggaagtga
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integrated database retrieval system
