Apium graveolens (celery): 141720665
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Entry
141720665 CDS
T11340
Name
(RefSeq) uncharacterized protein LOC141720665
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
agrv Apium graveolens (celery)
Pathway
agrv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agrv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141720665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agrv03019
]
141720665
Messenger RNA biogenesis [BR:
agrv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
141720665
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
TPR_12
TPR_10
TPR_16
ARM_TT21
TPR_19
Motif
Other DBs
NCBI-GeneID:
141720665
NCBI-ProteinID:
XP_074379307
LinkDB
All DBs
Position
4:227339467..227347294
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AA seq
834 aa
AA seq
DB search
MDSRESSSEEDASLSLAKEASLLFHSAKFVDCLKLLHQLLLTKPADPKVLHNIAIVENLQ
DGFLNPKRFLEVLNDVKKRSEKLATAPVDNLASVSNLESNDVADSNGSNCLMPQSSAANS
SSIVLNAEFASHVASYNIAVTWFNLCEYSKSFSVLEPVYQKIAPISDGIALRICLLLLDV
ALLSRHASRSAGIIDYVEKISSLRNMISQSENVSSTQPQSPNLATKSSSVPSTPISDISS
ADTPTNPSEISLSRSLSEEAEYENLFSTLDMSGQNLSRPSVLHSLNDISRTQVDDSIPII
DLRLKLHLYKVRLLLLTRNLKTAKREVKMAMNIARGNNSMVLFLKSQLEYARGNHPKAVK
LLMASSNRTEIGTSILFYNNLGCIHYRLGKYQTSAIYFSKALSTSSVIRKEKPQNQTHGS
FSLDKSLLVAYNCGMQYLAIGKPILAARCFYKASLVFYNRPLLWLRIAECCLMALEKGLL
DSTGAASESSEIKVHVVGKGKWRNLIVEDGIPKNSQADFAGRRDLLLGYDRQPKLSMSLA
RQCLLNALQLLNASESVHMSSGLPSDLAIEEETYSKSPYYKGVSGGDSEAHNLAVATGQI
ANGEVKDQKSASTSNTTLWNSISDYEDICRKEIQKIRQSILADLAYVELELGNPLKALST
ARSLLKVAECSRIYIFLGNVYAAEALCLLNRLKEAAEHLLIYLSSGNNVELPFNQEDCGL
WRVEKTVDCEESNGGSVAASNASDEGQVFALNPEEARGTLCANLSTMSAIQGDHEQADKF
VKQALSTLPNNRRAILTAVYLDLMLGKSHEAITRLKNCSHITFLPGSFAVTGSS
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggactcgcgtgaatcgtcatccgaagaagacgcctctctatcactagccaaagaagct
tctttgctttttcactctgctaagtttgttgattgtctcaaactcttgcatcagcttttg
cttaccaagcctgccgatcccaaggttctccataatattgctattgtagaaaacttgcaa
gatggatttttaaatccgaagagatttcttgaggtcctaaatgatgttaagaaacgaagt
gaaaagcttgcaactgcacctgtggacaatttagctagtgttagcaacttagaaagcaat
gatgtggcagattccaatggaagtaattgtttgatgccccaatcctctgcagctaatagc
tcctcaattgttctgaatgctgaatttgcctctcatgtggcttcgtacaacatagcagtt
acttggttcaatctatgcgagtattcaaagtcgttttctgttctggaaccggtgtatcag
aaaattgcaccaataagtgatggaattgctttacgtatatgccttctgttgctagatgtt
gcgctactgtcacgccatgcctcgagatctgctggtatcattgactatgttgagaagatt
tcttctctccggaatatgattagtcaaagtgaaaatgtgagctctacccagccacagtcg
cctaacctagcgacaaaaagttcttcagttcctagcacacccatttccgatatttcaagt
gctgatacccctacaaatccctcagaaatttctttgtccagaagtttatcggaggaagca
gaatatgaaaacttgttttcaactcttgacatgagcggacaaaacctatcaagaccttct
gttctccattctttaaatgatatctcgaggacccaggttgacgattctattccaattatt
gatttgagactcaagttgcatctgtacaaggttcggcttcttctccttacccggaacctg
aagacagctaaacgtgaagttaagatggctatgaacatagctagaggtaataattccatg
gttctctttctgaagtctcagcttgaatatgcccgtggaaatcatcctaaagcagttaag
cttttgatggcttcaagtaatcggacagaaatcggaacatctatattgttctacaacaat
cttggttgtatccattatcgacttggcaagtatcaaacctcggctatatacttttctaaa
gcgttaagtactagttcagttatacggaaggaaaagcctcagaaccagacccatggaagt
ttttcactggataaatctctccttgtagcttataactgtggtatgcagtacttggctatt
ggcaaaccgatacttgctgctcgatgtttttacaaagccagtttagttttttataatcgg
cctcttttatggctacggattgctgaatgttgtctgatggctcttgaaaagggactccta
gactccactggagctgcatccgaatcatcagagattaaggttcatgttgttggaaaggga
aagtggagaaatcttattgtggaagacgggatcccaaaaaatagccaggctgattttgct
ggtcgaagagatttattgctcggttatgataggcagcctaaactttccatgtccctggca
cgtcagtgtctattaaatgcattacaactgctaaacgcttccgagtcagtgcacatgagt
tctggtttgccatctgatctagccatcgaggaagaaacatattctaaaagtccctactat
aagggtgtttcaggaggtgattctgaagcacataacctggcagtagctacaggtcagatt
gcaaatggggaagtgaaagaccaaaaaagtgcaagcacttcaaataccaccttgtggaac
tccatttctgattacgaggatatatgtaggaaagagatccagaaaattagacaatctatt
cttgctgatttggcatatgtggagttggaactaggaaatcccttgaaagccttgtcaact
gcaaggtctctcctgaaagttgcagaatgttccagaatttacatattcttgggtaatgtt
tatgcagctgaagctctctgtttgctcaatcgtttgaaggaagctgcagaacatttgctg
atctatctttctagtgggaacaatgttgaacttccttttaaccaagaagattgtggactc
tggcgagtagaaaaaactgtggattgtgaggagtcaaatggcggttcagtggctgccagc
aacgcttctgatgaaggacaagtttttgcacttaatcctgaagaagcacgtggaaccctc
tgcgcaaacctatctaccatgtctgcaatacagggtgatcatgagcaggccgataaattt
gtaaagcaggcattatctaccttgccaaacaaccgcagagccattttaactgcggtttac
ctggatctcatgttggggaagtcccatgaagctatcacgaggttaaaaaattgtagccat
attactttccttcctggtagttttgcagtaacaggatcgtcatga
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