Agrobacterium sp. 33MFTa1.1: EYD00_13600
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Entry
EYD00_13600 CDS
T05906
Name
(GenBank) 2'-5' RNA ligase family protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
agt03016
]
EYD00_13600
Enzymes [BR:
agt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
EYD00_13600
Transfer RNA biogenesis [BR:
agt03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
EYD00_13600
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Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QBJ14327
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Position
circular:complement(2727059..2727775)
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AA seq
238 aa
AA seq
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MSFELTDNGGSGQLFLEGFDLEKQRRVNPRFGNKVLIVLKPPVALAERIFTDASCHAAGR
TKRAAHPAELLHITLLCVGCFDTVPRSFANRLKAALGEIRARPVPITFDGSSLFGNRSCL
ALSSRREMLELRALAKMVQRALWRANLPFVAASSFTPHLTVVYGCGKIDIMPVEKPYSWL
AGSFELIFSHNGETRHESLGRFPLSAKADRYEQPESQLYLPEKIFRPQKRSAHKMAAR
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
gtgagtttcgagttgacggataatggagggtcagggcagcttttcctcgaaggcttcgat
ctggagaagcagcgacgggtcaatccgcgatttggcaacaaggtcttgatcgtgctgaag
ccgccggtggccttggcggaaagaattttcaccgatgcatcgtgccatgccgccgggcgg
acgaagcgggcggcccatccagccgagcttctgcatatcaccctcctttgcgtcgggtgt
ttcgacaccgtgcctcgcagtttcgcaaaccggctgaaggcggcactgggggaaataagg
gcgcgtcccgttccgattacattcgatggcagctcgcttttcggcaatcgcagctgtctg
gcgctaagcagccgccgcgagatgctggagctcagagcattggcgaagatggtgcagcgc
gcgctttggcgggccaatctgccctttgttgccgcatcgtcgttcacgccgcatctcacc
gtggtctatggctgcgggaaaatcgatatcatgcctgttgaaaaaccatatagctggctg
gcgggcagcttcgaactcatcttcagccataatggagagacgcggcacgaatctctcggg
cgcttcccgctttcggcgaaagcggaccgctatgagcagccggaaagtcaattatatctg
ccggaaaaaatattcaggccgcagaagcggtcggcgcacaagatggcggcacgataa
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