KEGG   Agarivorans sp. TSD2052: M0C34_20075
Entry
M0C34_20075       CDS       T08089                                 
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
agz  Agarivorans sp. TSD2052
Pathway
agz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:agz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M0C34_20075 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:agz03019]
    M0C34_20075 (recQ)
   03400 DNA repair and recombination proteins [BR:agz03400]
    M0C34_20075 (recQ)
Enzymes [BR:agz01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     M0C34_20075 (recQ)
Messenger RNA biogenesis [BR:agz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     M0C34_20075 (recQ)
DNA repair and recombination proteins [BR:agz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      M0C34_20075 (recQ)
SSDB
Motif
Pfam: RQC Helicase_C DEAD HRDC RecQ_Zn_bind ResIII zf-CXXC
Other DBs
NCBI-ProteinID: UPW18488
LinkDB
Position
complement(4384211..4385998)
AA seq 595 aa
MQRAQQVLQDVFGFAEFRSGQAAVIQRLLADQDCLAIMPTGGGKSLCYQIPALVKSGLTV
VISPLISLMKDQVDSLQHNGVNAAYLNSSLARDQQYQVYRSLQQGELKLLYISPERLING
DFIQRLQALPLAMFAIDEAHCISQWGHDFRPEYNALGCLKQNFPNIPLVALTATADDTTR
LDIVQRLGLGEAFTHISSFDRPNIRYTLQEKYRPWQQLSDYVKRRREDSGIVYCSSRKRV
EELAMKLSAEGLRSAAYHAGLPIAQRQLVQEQFQRDEIEVVVATVAFGMGIDKPNVRYVF
HYDIPRNIEAYYQETGRAGRDGTEAEAVFLYDPADANWVRRMIEENENEQQRRVESHKFN
AIVAFAEAQTCRRQVLLNYFGEYLAKPCGNCDVCLDPPKQYDGLQDAQKALSCVYRLGQR
FGIGYVIEVLRGSMGQRILEQGHDKLSTHGIGKSASHEHWMSILRQLIHLGLLQQNIARS
SVLQLTEAARPFLKGEQPLSLAVPRLNTTKQSKKTASYGVYDKRLFALLRNLRKRLADEE
SVPPFVVFNDATLIEMAQQQPQTQHEMLAISGVGLKKLERYGYQFLGLIDQYQAS
NT seq 1788 nt   +upstreamnt  +downstreamnt
atgcagcgcgcccagcaagttctacaagatgtttttggttttgccgaatttagaagcggg
caagcggcggttattcagcgtttgttggcagaccaagattgccttgccattatgcctacg
ggcggtggaaaatccttgtgttaccaaattcctgctttagttaagtcaggtttaacagtg
gtcatttcaccactcatttcgttgatgaaagatcaagtagacagtttgcagcataatggt
gtgaatgcagcctacttaaactctagcttagcgcgtgatcagcaataccaagtttaccga
agcctccagcagggtgagctgaaattactgtatatttcgcccgagcgattgattaatggt
gactttatacaacgcttgcaagcattgcctttggctatgtttgccattgatgaggcgcat
tgtatttcgcaatggggtcatgattttaggcctgaatataatgcgctgggttgcctcaaa
cagaattttcctaacatacccttggtcgctttaactgcgaccgccgatgatacaacacgc
ttagatattgttcagcgattggggctgggtgaagccttcacccatatatctagttttgat
cgccctaatattcgttataccttacaagaaaaatatcgcccttggcagcagcttagtgat
tatgtaaaacgacgccgagaagacagcggtattgtgtattgcagtagccgtaaacgcgtc
gaagagttggcgatgaaactgagtgccgaaggtttgcgcagtgctgcctatcatgcgggc
ttgccaatagcacaacgccagttggttcaggaacagtttcagcgggatgaaatagaagtg
gtggttgccacagtcgcctttggaatgggcattgataaacccaatgtgcgctatgtattt
cactacgatattccacgaaatattgaagcttattaccaagaaaccggtcgcgcagggcga
gatggcaccgaagccgaagcggtatttttgtatgatcctgccgatgcgaattgggtgcgg
cggatgattgaagaaaatgaaaacgagcaacagcggcgagtggaaagccataagtttaat
gccattgtggcctttgctgaggcacaaacctgtcgtcgccaagtattgttgaattatttc
ggtgagtatctcgctaaaccttgtggtaactgtgatgtttgtttagaccctcctaagcaa
tatgatggtctgcaagatgcacaaaaggcactatcttgcgtttatcgcttaggtcagcgc
tttggtattggttacgttatcgaagtattacgtggcagtatgggacagcgcatacttgaa
caaggtcatgacaaactgtctacgcatgggatcggaaaaagtgccagtcatgagcattgg
atgagcattttacgtcaattgatccatttgggcttgttacagcaaaacattgctcgtagc
tctgtgctccaacttaccgaagccgcacgaccgtttctcaagggtgagcaaccattatcg
ttggcggtaccgcgcctaaataccaccaagcaaagcaaaaaaaccgccagttatggggtt
tatgataaacgtttgtttgctttgctacgtaatttaagaaagcgcttggctgatgaagaa
tcggtacctccatttgtggtctttaacgatgcgacattgattgaaatggcacagcaacaa
ccgcaaacgcaacatgaaatgttggccattagtggtgtgggtttaaagaaattagaacga
tatgggtatcaattcttgggccttatcgatcaatatcaggcaagctaa

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