Agarivorans sp. TSD2052: M0C34_20075
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Entry
M0C34_20075 CDS
T08089
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
agz
Agarivorans sp. TSD2052
Pathway
agz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0C34_20075 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agz03019
]
M0C34_20075 (recQ)
03400 DNA repair and recombination proteins [BR:
agz03400
]
M0C34_20075 (recQ)
Enzymes [BR:
agz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M0C34_20075 (recQ)
Messenger RNA biogenesis [BR:
agz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0C34_20075 (recQ)
DNA repair and recombination proteins [BR:
agz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M0C34_20075 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UPW18488
LinkDB
All DBs
Position
complement(4384211..4385998)
Genome browser
AA seq
595 aa
AA seq
DB search
MQRAQQVLQDVFGFAEFRSGQAAVIQRLLADQDCLAIMPTGGGKSLCYQIPALVKSGLTV
VISPLISLMKDQVDSLQHNGVNAAYLNSSLARDQQYQVYRSLQQGELKLLYISPERLING
DFIQRLQALPLAMFAIDEAHCISQWGHDFRPEYNALGCLKQNFPNIPLVALTATADDTTR
LDIVQRLGLGEAFTHISSFDRPNIRYTLQEKYRPWQQLSDYVKRRREDSGIVYCSSRKRV
EELAMKLSAEGLRSAAYHAGLPIAQRQLVQEQFQRDEIEVVVATVAFGMGIDKPNVRYVF
HYDIPRNIEAYYQETGRAGRDGTEAEAVFLYDPADANWVRRMIEENENEQQRRVESHKFN
AIVAFAEAQTCRRQVLLNYFGEYLAKPCGNCDVCLDPPKQYDGLQDAQKALSCVYRLGQR
FGIGYVIEVLRGSMGQRILEQGHDKLSTHGIGKSASHEHWMSILRQLIHLGLLQQNIARS
SVLQLTEAARPFLKGEQPLSLAVPRLNTTKQSKKTASYGVYDKRLFALLRNLRKRLADEE
SVPPFVVFNDATLIEMAQQQPQTQHEMLAISGVGLKKLERYGYQFLGLIDQYQAS
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcgcccagcaagttctacaagatgtttttggttttgccgaatttagaagcggg
caagcggcggttattcagcgtttgttggcagaccaagattgccttgccattatgcctacg
ggcggtggaaaatccttgtgttaccaaattcctgctttagttaagtcaggtttaacagtg
gtcatttcaccactcatttcgttgatgaaagatcaagtagacagtttgcagcataatggt
gtgaatgcagcctacttaaactctagcttagcgcgtgatcagcaataccaagtttaccga
agcctccagcagggtgagctgaaattactgtatatttcgcccgagcgattgattaatggt
gactttatacaacgcttgcaagcattgcctttggctatgtttgccattgatgaggcgcat
tgtatttcgcaatggggtcatgattttaggcctgaatataatgcgctgggttgcctcaaa
cagaattttcctaacatacccttggtcgctttaactgcgaccgccgatgatacaacacgc
ttagatattgttcagcgattggggctgggtgaagccttcacccatatatctagttttgat
cgccctaatattcgttataccttacaagaaaaatatcgcccttggcagcagcttagtgat
tatgtaaaacgacgccgagaagacagcggtattgtgtattgcagtagccgtaaacgcgtc
gaagagttggcgatgaaactgagtgccgaaggtttgcgcagtgctgcctatcatgcgggc
ttgccaatagcacaacgccagttggttcaggaacagtttcagcgggatgaaatagaagtg
gtggttgccacagtcgcctttggaatgggcattgataaacccaatgtgcgctatgtattt
cactacgatattccacgaaatattgaagcttattaccaagaaaccggtcgcgcagggcga
gatggcaccgaagccgaagcggtatttttgtatgatcctgccgatgcgaattgggtgcgg
cggatgattgaagaaaatgaaaacgagcaacagcggcgagtggaaagccataagtttaat
gccattgtggcctttgctgaggcacaaacctgtcgtcgccaagtattgttgaattatttc
ggtgagtatctcgctaaaccttgtggtaactgtgatgtttgtttagaccctcctaagcaa
tatgatggtctgcaagatgcacaaaaggcactatcttgcgtttatcgcttaggtcagcgc
tttggtattggttacgttatcgaagtattacgtggcagtatgggacagcgcatacttgaa
caaggtcatgacaaactgtctacgcatgggatcggaaaaagtgccagtcatgagcattgg
atgagcattttacgtcaattgatccatttgggcttgttacagcaaaacattgctcgtagc
tctgtgctccaacttaccgaagccgcacgaccgtttctcaagggtgagcaaccattatcg
ttggcggtaccgcgcctaaataccaccaagcaaagcaaaaaaaccgccagttatggggtt
tatgataaacgtttgtttgctttgctacgtaatttaagaaagcgcttggctgatgaagaa
tcggtacctccatttgtggtctttaacgatgcgacattgattgaaatggcacagcaacaa
ccgcaaacgcaacatgaaatgttggccattagtggtgtgggtttaaagaaattagaacga
tatgggtatcaattcttgggccttatcgatcaatatcaggcaagctaa
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