Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_1229
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Entry
AHA_1229 CDS
T00424
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aha
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Pathway
aha03030
DNA replication
aha03410
Base excision repair
aha03420
Nucleotide excision repair
aha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AHA_1229 (ligA)
03410 Base excision repair
AHA_1229 (ligA)
03420 Nucleotide excision repair
AHA_1229 (ligA)
03430 Mismatch repair
AHA_1229 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aha03032
]
AHA_1229 (ligA)
03400 DNA repair and recombination proteins [BR:
aha03400
]
AHA_1229 (ligA)
Enzymes [BR:
aha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AHA_1229 (ligA)
DNA replication proteins [BR:
aha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AHA_1229 (ligA)
DNA repair and recombination proteins [BR:
aha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AHA_1229 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AHA_1229 (ligA)
MMR (mismatch excision repair)
DNA ligase
AHA_1229 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AHA_1229 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ABK36968
UniProt:
A0KHL9
LinkDB
All DBs
Position
1338670..1340676
Genome browser
AA seq
668 aa
AA seq
DB search
MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIVLEAEHPELKTPASPSV
RVGGQPLTAFKQVRHEIPMLSLDNVFSGEELQAFEQRMRDRLKREVSFTFCCEPKLDGLA
VSLLYVAGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLGGSHFG
RLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTECPVCGSAVERLEGE
AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLEALLAAGIHWPAIEKKEASEQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEE
ELQQALQG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatcctctcccgccaccgtcaactgtgtgagctgctgatcgagtacggtcat
cagtactatgtgctggacaaccccacggtgccggacgccgaatacgatcgcctgatgcgt
gagctgatcgtgctggaagccgagcaccccgagctgaagacgccggcctcgccgagcgta
cgggtgggcggccagccgctgaccgccttcaagcaggtgcgccacgagatccccatgctg
agcctggacaacgtgttcagcggcgaggagctgcaggccttcgagcagcgcatgcgcgat
cgcctcaagcgggaggtgagctttaccttctgctgcgagcccaagctggacggtctggcg
gtgagcctgctctatgtggctggccagctggtgcaggccgccacccggggcgatggcacc
acgggtgaggagatcaccgagaacgtgcgcaccatcaaggccattcccttgtccctgcgt
ggcgagggctggccggcccggctggaagtgcgtggcgaggtgttcatgcccaaggcgggg
ttcgaggcgatgaacgccaaggcgctggccgccggcgagaaggtgttcgtcaacccgcgc
aatgccgccgccggcagcctgcgccagctcgactcgcgcatcaccgccagccgcccgctg
gccttctacgcctatggcgtgggggtgggtggcgagcagctcggtggctctcacttcggt
cgcctcaatcagctcaaagagtgggggctgccgctcagtcccgaggtgaagctcaaggag
ggggccgccggttgccaggcgttccacgacgacatcctggcgcgccgcggcgagctcccc
tacgagatcgacggcgtggtctacaaggtggatgccatccccctgcaggaggagctcggg
tttgtggcgcgggcgccgcgctgggccaccgcccacaagttcccggcccaggaggagatg
acggagcttgagaacgtcgagttccaggtcggccgtaccggcgccgtgaccccggtggcc
aagctcaagccggtatttgtcggcggtgtcacagtctccaacgccaccctgcacaatgcc
gacgagattgagcgccttggcgtgatgatcggcgacaccgtgatcgtgcgccgggccggg
gacgtgatcccgcagatcgtggcggtagtggaggcgcagcgcccggcggatgcccgcgcg
atcctgttcccgaccgagtgtccggtgtgcggctcggcggtggagcggctggagggagag
gcggtgacccgctgctccggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cacttcgccgcccgccgtgccatggacgtggacggccttggcgacaagatagtggagcaa
ctggtggacaaggggctggtgaagaccccggcggacttgttcagcctcaacgccattcag
ctggccgggctcgagcggatggggcaaaagtcggccctcaatctggtggccgccatcgat
gcggcccgcagcaccacgctgccccgcttcctgtttgcgctggggatccgcgaagtgggg
gaggcgaccgccttgaacctcgccaaccacttcctcactttggacgccctgcgcgccgcc
tcggtggagcagttgctggaagtggccgacgtgggggacatagtggccaagcacgtctac
tacttcctgcgccagccccacaacatcgaggtgctggaggctctgctggccgctggtatc
cactggcctgccatcgagaagaaggaggcaagcgagcagccctttgccggcaagaccttc
gtgctgaccggtaccctcaccacgctgtcgcgcaacgacgccaaggcagcgctgcaggcg
ctaggggccaaggtggcgggctcggtgtcggccaagaccgatgtgctggtagcgggggag
gcggcaggctccaaactggtcaaggcccaggagctcggcatcacagtctggagtgaagag
gagctgcaacaggcgttgcagggctga
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integrated database retrieval system
