Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_4028
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Entry
AHA_4028 CDS
T00424
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aha
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Pathway
aha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AHA_4028 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aha03021
]
AHA_4028 (rpoB)
03400 DNA repair and recombination proteins [BR:
aha03400
]
AHA_4028 (rpoB)
Enzymes [BR:
aha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AHA_4028 (rpoB)
Transcription machinery [BR:
aha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AHA_4028 (rpoB)
DNA repair and recombination proteins [BR:
aha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AHA_4028 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
ABK39764
UniProt:
A0KQA5
LinkDB
All DBs
Position
complement(4466890..4470981)
Genome browser
AA seq
1363 aa
AA seq
DB search
MLRQSCPVGQSGSLISELRNPMVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFI
EADPEGEYGLEAAFRSVFPITSYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVK
LRMVLYDREAAAGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDH
DKGKTHSSGKVLYNARVIPYRGSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEQ
ILATFFETIGFEVKDGKLMMDLVPERLRGETATFDIVANGAVVVETGRRVTARHIRQLEK
DSVTQIEVPVEYVVGKVAAKDYAHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTN
ELDHGAYMSETLRIDSSSSRLEALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLST
VGRMKFNRRLAREDETGVGTLTKDDIVDVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEM
AENQFRVGLVRVERAVKERLSLGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNN
PLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYS
RTNEYGFLETPYRKVIDGVITDEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHK
GESTFMNADQIQYMDVSPQQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPL
VGTGMERAVAVDSGVTVVAKRGGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRS
NQNTCINQRPCVMLGEPVMAGDVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVN
ERVVQEDRLTTIHIQELACISRDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKG
GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGV
EKDKRAKEIEEMQLKEAKKDLTEEFKILEDGIFGRSRNLLLAAGYSEDRLNKLDRSKWFE
LAIEDEAKQIELEQIAEQHVELKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKRR
IQPGDKMAGRHGNKGVISKICPVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLGL
AAKGIGEKIDRMVKEQRELHEMRDFLQQVYDLGEKDTQQVNVAELSDDDVRTLVGNLRKG
LPVATPVFDGAKEREIKALLKLADLPESGQIALFDGRTGNAFERKVTVGYMYMLKLNHLV
DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN
GRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELDEE
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
gtgttgagacagagctgtcccgtgggacagagtgggtcacttatcagcgagctgaggaac
cctatggtttactcttataccgaaaaaaaacgcattcgtaaggacttcggtaagcgagac
caggtactggacacgccttatctgttgtccattcagctggactccttcaagcagttcatc
gaggctgacccggaaggtgaatatggcctagaggccgctttccgtagcgttttcccgatc
accagttactccggtagtgctgagcttcagtatgtcagctatcgcctgggtgagccggta
tttgacgtaaaagaatgccagatccgtggagtgacctactccgcgccgctgcgtgtcaag
cttcgtatggttctgtacgaccgtgaagcagctgccggcaccgtcaaagacatcaaggaa
caagaagtatacatgggcgaaattccgctcatgaccgagaacggcacctttgttatcaat
ggtaccgagcgggtaatcgtctcccagctgcatcgtagcccgggcgtcttcttcgaccac
gataaaggcaaaacacattcatccggtaaggtgctgtataacgcgcgcgttattccctac
cgtggctcctggctggacttcgagttcgatgcgaaagacaacctgtttgtccgtatcgac
cgtcgtcgtaaactgccggcatccattattctgcgtgccctggatttcagttccgaacag
attctggccaccttcttcgaaaccatcggtttcgaagtcaaagatggcaagttgatgatg
gatctggtgccggagcgcctgcgtggtgaaactgcgacctttgacatcgtggccaatggc
gccgtggtggttgagaccggtcgtcgagtgactgcgcgtcacatccgtcagttggaaaaa
gattccgttacccagattgaggtaccggttgagtatgttgttggcaaagttgctgccaag
gactacgcacatccgcaaactggcgagatggtagtgactgccaaccaggcgctgagcctg
gaagcggtagccaacctctcccaagccggcttcaagcacttcgaggttctgttcaccaac
gaactggatcacggtgcctacatgtccgagaccctgcgtatcgactccagctccagccgc
ctggaagcgctggtcgaaatctatcgcatgatgcgtccgggtgagccgccgactcgcgaa
gccgcagaacagctgttcgagaacctgttcttctcttccgagcgttacgacctgtctacc
gtaggtcggatgaagttcaaccgccgtctggctcgtgaagacgagaccggcgtgggtact
ctgaccaaagacgacatcgtcgatgtgatgaagcgcctgatcgacatccgtaacggtaac
gacgaagtggacgatatcgaccacctgggcaaccgtcgtatccgttctgtcggtgaaatg
gctgaaaaccagttccgcgtcggtctggtgcgtgtcgagcgtgcggtcaaggagcgtctc
tccctgggcgacctggacaccctgatgccgcaggatctgatcaacgccaagccgatctcc
gccgcagtcaaagagttctttggttccagccaactgtcccagttcatggaccagaacaac
ccgctgtccgaagtgacccacaagcgccgtatctccgcgctgggcccgggtggtttgact
cgtgagcgtgccggctttgaagttcgagacgtacacccgacccactacggtcgtctgtgc
cccatcgaaacgcctgaaggtccgaacatcggtctgatcaactctctgtccgtgtactct
cgtaccaacgagtacggtttcctcgagactccgtaccgcaaggtcattgacggtgtgatc
accgacgaagtggactatctgtctgctattgaagaaggcaagtacgtgatcgcacaggct
aacgccgcgaccaccgaagatggccgtctgaaagatgaattgatcccgtgccgtcacaaa
ggtgaatccacctttatgaacgccgaccagatccagtatatggacgtgagcccgcagcag
atcgtatctgtggcagcggccctgatcccgttcctggaacacgatgacgcgaaccgcgca
ttgatgggttcaaacatgcaacgtcaggctgtaccgactctgcgcgccgacaagccgctg
gttggtaccggtatggaacgcgctgtggccgttgactccggtgttaccgtagtggccaag
cgtggcggcatgatcgactacgttgatgcctcccgtatcgttatcaaggtcaacgaagat
gagctgctgcctggcgaagccggcatcgacatctacagcctgaccaaatacacccgttcc
aaccagaacacctgtatcaaccagcgtccgtgcgtgatgttgggcgagccggtgatggcg
ggcgacgtgctggctgacggcccgtccaccgacctgggtgaactggcgctgggtcagaac
ctgcgcgtcgcgttcatgccgtggaacggttacaacttcgaagactcgatcctggtgaac
gagcgtgttgttcaggaagatcgcctgaccaccattcacatccaggaactggcctgtatc
tcccgtgacaccaagctgggtccggaagagatcactgctgacatcccgaacgtgggtgaa
gccgctctgtccaagctggacgagtccggtatcgtctacgtgggtgccgaagtgaagggc
ggcgacattctggtcggtaaggtaacgccgaaaggtgaaacccagctgacgccggaagag
aagctgctgcgcgccatcttcggtgagaaggcgtccgacgtgaaggactcttccctgcgt
gtgccgaacggtgtgtacggtactgtggttgacgtgcaggtctttacccgcgatggcgtg
gaaaaagacaagcgcgccaaagaaatcgaagagatgcagctgaaggaagcgaagaaggac
ttgaccgaagagttcaagatcctggaagacggcattttcggccgctcccgcaacctgctg
ctggccgccggctacagcgaagaccgtctgaacaagctcgatcgctccaagtggtttgaa
ctggccatcgaagatgaagccaagcaaatcgagctggaacagatcgctgaacagcacgtt
gagctgaaggctgagttcgacaagaaattcgagaacaagcgtcgcaagatcatccagggc
gatgacctggcgccgggcgtactgaagatcgtcaaggtctatctggccgtcaagcgtcgc
atccagccgggtgacaagatggcgggtcgtcacggtaacaagggtgttatctccaagatc
tgtccggtcgaggatatgccccatgacgagtacggccgtccggtcgacatcgttctgaac
ccgttgggcgtaccgtcccgtatgaacatcggtcagatcctcgaagtgcacttgggcctc
gcggccaagggtatcggcgagaagatcgaccgcatggtcaaggaacagcgcgaactgcac
gagatgcgtgacttcctgcaacaggtctatgacctgggcgagaaagacactcagcaagtg
aacgtggccgagctgtccgacgacgacgtacgtaccctggttggtaacctgcgcaagggt
ctgccggtcgctacgccggtctttgatggcgccaaagagcgtgaaatcaaggccctgctg
aagctggccgacctgccggaatccggtcagatcgccctgttcgacggtcgtaccggtaac
gccttcgagcgtaaggtcaccgtgggttacatgtacatgctgaagttgaaccacctggta
gacgacaagatgcacgcgcgttctaccggttcttacagcctggttacccagcagccgctg
ggtggtaaggcacagttcggtggtcagcgtttcggtgagatggaagtgtgggccctggag
gcttacggtgcggcatataccctgcaggagatgctgaccgtcaagtctgacgatgtgaac
ggccgtaccaagatgtacaagaacatcgtggatggcgaccaccgtatggagccgggcatg
cccgaatccttcaacgtattgctgaaggaaatccgctctctgggtatcaacatcgagctg
gacgaagagtaa
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integrated database retrieval system
