Anoxybacterium hadale: FRZ06_20020
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Entry
FRZ06_20020 CDS
T10883
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ahad Anoxybacterium hadale
Pathway
ahad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FRZ06_20020 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahad03021
]
FRZ06_20020 (rpoC)
03400 DNA repair and recombination proteins [BR:
ahad03400
]
FRZ06_20020 (rpoC)
Enzymes [BR:
ahad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FRZ06_20020 (rpoC)
Transcription machinery [BR:
ahad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FRZ06_20020 (rpoC)
DNA repair and recombination proteins [BR:
ahad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FRZ06_20020 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QOX65481
LinkDB
All DBs
Position
4561210..4564857
Genome browser
AA seq
1215 aa
AA seq
DB search
MYELNNFEALQISLASTEKIRSWSKGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDI
SPRNLEKVLYFAAYIVTDPGSSGLGYKEILTEQQYREARDKYGAGFKAAMGAEAIRDLLA
QIDLVALSDDMRKKLRDSSGQKKIRIVRRLEVIEALRLSENKPEWMVLEVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGSRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPKK
MALELFKPFIMKKLVQKGHSHNIKSAKRMVEKVRPEVWDVLDEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNIL
APKDGSPITTPTQDMILGSYYLTHPGVEERNTPAEKGDGKIFTDFDEMLMAYRNGVVGLH
ARVKVRLFLEGDSRGKLIESTVGRFIFNEKIPQDMGYVDREIDKYSLEIDFLCDKKKLSQ
IIDKCYRRHGNTKTAIMLDYIKDTGFHYSTIGAITISVSDMEIPKEKPRILAEAEKKVEK
YETAYRRGLMSNSERYEKVIDIWNNATDDIADELMKSLGTLNNLFIMAHSGARGSKSQIK
QVGGMRGLMANASGKTIEIPIKSNFREGLSVLEYFISTNGARKGLADTALRTADSGYLTR
RLVDVSHNVIVREVDCGTDEGIEVKAFTDGKEVIEPLKLRIIGRIALIDIVNPKTGKVIV
EQGEEILEGHADEIEASGIESVAIRSVMTCHSVYGICAKCYGRNLATGESVNIGEAVGIT
AAQSIGEPGTQLTMRTFHTGGVAGSDITHGLPRVEELFEARKPKGLAEICEGDGTVVSIE
SRKDNKTEVKVRGEEERVYIIPYGARLNVKEGDYVLAGGQITKGPLNPHDILRLNGVEGV
YQYLLKEVQRVYKQQGVDINDKHVEVIVSQMLSKYKIEDAGDTALLPGGLYSKFELDDAN
EAAEAAGGEMAVGKRILLGITKASLATNSFLSAASFQETTRVLTDAAIKGKMDRLLGLKE
NVIIGKLIPAGTGMKRYKNITVDYGVNTELMDSFKPPVEDEDFDDYDSEPMRAADVEDLA
DMSEIAELAEIIEVE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgtatgaattaaacaattttgaagcactgcaaatcagtcttgcatctacagaaaagata
agaagctggtcaaaaggagaggttaaaaaacccgaaaccattaactacagaactttgaaa
cctgagaaagaaggtttgttctgcgagagaatcttcgggcctcagaaggactgggagtgt
cattgcggtaaatataagagaattcgatataaaggcatcgtttgtgatcgctgcggagta
gaggttacaaaggcaaaagtcagaagagaaagaatgggccacatcgaacttgcggcccct
gtttcccacatttggtatttcaagggcatcccgagcagaatgggtttggttcttgacatt
tccccaagaaatttggagaaagtcttatatttcgcagcttacatcgttaccgatccgggc
agctctggactgggatacaaggaaattttgactgagcagcagtaccgagaagcaagagac
aagtacggtgcagggtttaaggcggcaatgggtgcggaagcgattcgtgacctgctggcc
cagattgaccttgtggctctgtccgacgacatgagaaaaaagctgagagacagctccggg
cagaagaagattagaatcgtcagaaggcttgaagtgattgaagcgctgagattatctgag
aataaaccggaatggatggttcttgaggtaatcccggtgattcctccggatctgagaccg
atggttcagctggacggcggacgttttgccacttccgacctgaacgacctatatagaaga
gtaatcaacagaaataatagacttaagagactgctggatcttggagcacctgatatcatc
gtcagaaatgaaaagagaatgcttcaggaggcggtagatgccctcatcgacaacggcagg
agaggaagaccggtaacgggacctggaagcagaccgctgaaatccctgtcagacatgctg
aagggaaaacagggacgattcagacagaaccttctcggaaagcgtgttgactattccgga
cgttccgtaatcgttgttggaccggagctgaagttctatcagtgcggtctgccaaagaaa
atggcactggagctgtttaagcctttcattatgaaaaagcttgttcagaaggggcattcc
cacaatatcaagagcgctaagagaatggttgaaaaggttagaccagaggtttgggacgtt
ctcgacgaggttatcaaggagcatcctgtacttttaaaccgtgctcccacgctgcataga
ttgggaattcaggctttcgagccggtccttgtagaaggtaaagccataaagctccatccg
ctggtttgtactgcatataatgcggacttcgatggagaccagatggcggtacacgttcca
ctgtctgtagaagcacaggcagaagcaagattcctcatgctttccgtaaacaacattctt
gcgccgaaagatggatcgcctatcacgacgccgacacaggatatgattttgggaagctac
tacctgacccaccccggtgtagaagagagaaatactccggccgaaaagggcgatggaaag
atctttactgactttgatgaaatgcttatggcatatagaaacggagttgtgggccttcat
gcgagagtaaaggtgagattgttcctggaaggagattcaagaggtaagctcatcgaatcc
accgtcggaaggttcatcttcaacgagaagatccctcaggatatgggctatgtggacaga
gaaatcgacaagtattctcttgaaatcgattttctttgcgacaagaagaagctgagtcag
atcattgataaatgctacagaagacacggaaatacaaagacggcaatcatgcttgactat
atcaaggatacgggcttccactactccaccatcggagccattaccatcagcgtctccgac
atggaaataccgaaagagaaaccaagaatccttgcagaagcggaaaagaaggttgaaaag
tacgaaaccgcttatcgaagaggactcatgtccaattcggaacgatatgaaaaggttatc
gatatttggaacaatgcgacagatgacatcgctgatgaactgatgaagtcgctggggaca
ctgaataacctgttcatcatggcgcactccggagctcgaggaagcaagagccagatcaag
caggtcggcggtatgcgtggactcatggccaacgcatcaggaaagaccattgaaattccg
atcaagtccaacttccgtgaaggactttccgtactggaatactttatttccaccaacgga
gcaagaaaaggtcttgcagatacagcgctcagaacggcagactccggttatctgaccaga
agacttgtagacgtcagccataacgttatcgtaagggaagttgactgcggaaccgatgag
ggaatcgaagttaaggcctttacagatggcaaggaggttattgagcctctgaagctccgt
atcatcggaagaattgctttgatcgacatcgtgaacccgaaaaccggaaaggttatcgtg
gaacagggagaagaaattctggagggtcacgccgacgagattgaggcatccggcattgaa
tcggtagccatccgttccgttatgacctgtcacagtgtatacggtatctgcgcgaaatgc
tacggcagaaacctggcgacaggagagtcggtcaacatcggtgaagcggtcggtatcaca
gctgctcagtccatcggtgaaccgggtactcagctgaccatgcgtacgttccatacagga
ggcgtagcgggaagcgatatcacacacggtcttcctagagtagaagaacttttcgaggct
agaaagccaaagggtcttgcagagatctgcgaaggggacgggactgttgtatcgattgaa
tcaagaaaagacaataagacagaagtaaaggtcagaggagaagaggaacgggtatatatc
ataccttacggtgcaagactgaacgttaaggaaggggattacgtcctcgccggcggacag
attaccaaaggtccgttgaaccctcatgatattttaagactcaatggagtcgaaggcgta
tatcagtaccttctcaaagaagtacagagagtatacaaacagcagggtgtagatatcaac
gacaaacacgttgaagtaatcgtaagccagatgctgtctaagtataaaatcgaggatgcc
ggagatactgcgttactgccaggtggtttgtacagcaaatttgagctggacgatgccaat
gaagcagcagaagcggccggtggagaaatggcagtgggtaagaggatcctccttggaatc
acgaaggcttctcttgcaacaaattccttcctgtcagcagcatccttccaggaaacgacc
cgtgttctcacagatgctgccatcaaaggcaagatggaccgactcctgggattaaaggaa
aatgttatcattggaaagctgatccctgcaggaactggtatgaagagatacaagaatatc
actgttgactacggtgtaaacaccgagttgatggactccttcaaaccaccggtggaggat
gaggacttcgacgattatgacagtgaaccgatgagagcggcagatgtggaagacctggca
gatatgtcagagattgcagaactcgccgagatcattgaagtcgaataa
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integrated database retrieval system
