Aeromonas hydrophila AH10: VU14_01520
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Entry
VU14_01520 CDS
T03886
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ahi
Aeromonas hydrophila AH10
Pathway
ahi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VU14_01520 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahi03021
]
VU14_01520 (rpoB)
03400 DNA repair and recombination proteins [BR:
ahi03400
]
VU14_01520 (rpoB)
Enzymes [BR:
ahi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VU14_01520 (rpoB)
Transcription machinery [BR:
ahi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VU14_01520 (rpoB)
DNA repair and recombination proteins [BR:
ahi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VU14_01520 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
AKA15651
UniProt:
A0A081UWL0
LinkDB
All DBs
Position
340515..344543
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEADPEGEYGLEAAFRSVFPIT
SYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEQILATFFETIGFEVKDGKLMMD
LVPERLRGETATFDIVANGAVVVETGRRVTARHIRQLEKDSVTQIEVPVEYVVGKVAAKD
YAHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETLRIDSSSSRL
EALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLAREDETGVGTL
TKDDIVDVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPYRKVIDGVIT
DEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQYMDVSPQQI
VSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVDSGVTVVAKR
GGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCVMLGEPVMAG
DVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTIHIQELACIS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEMQLKEAKKDL
TEEFKILEDGIFGRSRNLLLAAGYSEDRLNKLDRSKWFELAIEDEAKQIELEQIAEQHVE
LKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIC
PVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGEKIDRMVKEQRELHE
MRDFLQQVYDLGEKDTQQVNVAELSDDDVRTLVGNLRKGLPVATPVFDGAKEREIKALLK
LADLPESGQIALFDGRTGNAFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgaaaaaaaacgcattcgtaaggacttcggtaagcgagaccag
gtactggacacgccttatctgttgtccattcagctggactccttcaagcagttcatcgag
gctgacccggaaggtgaatatggcctagaggccgctttccgtagcgttttcccgatcacc
agttactccggtagtgctgagcttcagtatgtcagctatcgcctgggtgagccggtattt
gacgtaaaagaatgccagatccgtggagtgacctactccgcgccgctgcgtgtcaagctt
cgtatggttctgtacgaccgtgaagcagctgccggcaccgtcaaagacatcaaggaacaa
gaagtatacatgggcgaaattccgctcatgaccgagaacggcacctttgttatcaatggt
accgagcgggtaatcgtctcccagctgcatcgtagcccgggcgtcttcttcgaccacgat
aaaggcaaaacacattcatccggtaaggtgctgtataacgcgcgcgttattccctaccgt
ggctcctggctggacttcgagttcgatgcgaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaaactgccggcatccattattctgcgtgccctggatttcagttccgaacagatt
ctggctaccttcttcgagaccatcggtttcgaagtcaaagatggcaagttgatgatggat
ctggtgccggagcgcctgcgtggtgaaactgcgacctttgacatcgtggccaatggcgcc
gtggtggttgagaccggtcgtcgagtgactgcgcgtcacatccgtcagttggaaaaagat
tccgttacccagattgaggtaccggttgagtatgttgttggcaaagttgctgccaaggac
tacgcacatccgcaaactggcgagatggtagtgactgccaaccaggcgctgagcctggaa
gcggtagccaacctctcccaagccggcttcaagcacttcgaggttctgttcaccaatgaa
ctggaccacggtgcctacatgtccgagaccctgcgtatcgactccagctccagccgcctg
gaagctctggtcgaaatctatcgcatgatgcgtccgggtgagccgccgactcgcgaagcc
gcagaacagctgttcgagaacctgttcttctcttccgagcgttacgacctgtctaccgta
ggtcggatgaagttcaaccgccgtctggctcgtgaagacgagaccggcgtgggtactctg
accaaagacgacatcgtcgatgtgatgaagcgcctgatcgacatccgtaacggcaatgac
gaggtggacgatatcgaccacctgggcaaccgtcgtatccgttctgtcggtgaaatggct
gaaaaccagttccgcgtcggtctggtgcgtgtcgagcgtgcggtcaaggagcgtctctcc
ctgggcgacctggacaccctgatgccgcaggatctgatcaacgccaagccgatctccgcc
gcagtcaaagagttctttggttccagccagctgtcccagttcatggaccagaacaacccg
ctgtccgaagtgacccacaagcgccgtatctctgcgctgggcccgggtggtttgactcgt
gagcgtgccggctttgaagttcgagacgtacacccgactcactacggtcgtctgtgcccc
atcgaaacgcctgaaggtccgaacatcggtctgatcaactctctgtccgtgtactctcgt
accaacgagtacggtttcctcgagaccccgtaccgcaaggtcattgacggtgtgatcacc
gacgaagtggactatctgtctgctattgaagaaggcaagtacgtgatcgcacaggctaac
gccgcgaccaccgaagatggccgtctgaaagatgaattgatcccgtgccgtcacaaaggt
gaatccacctttatgaacgccgaccagatccagtatatggacgtgagcccgcagcagatc
gtatctgtggcagcggccctgatcccgttcctggaacacgatgacgcgaaccgcgcattg
atgggttcaaacatgcaacgtcaggctgtaccgactctgcgcgccgacaagccgctggtt
ggtaccggtatggaacgcgctgtggccgttgactccggtgttaccgtagtggccaagcgt
ggcggcatgatcgactacgtcgatgcctcccgtatcgttatcaaggtcaacgaagatgag
ctgctgcctggcgaagccggcatcgacatctacagcctgaccaaatacacccgttccaac
cagaacacctgtatcaaccagcgtccgtgcgtgatgttgggcgagccggtgatggcgggc
gacgtgctggctgacggcccgtccaccgacctgggtgaactggcgctgggtcagaacctg
cgcgtcgcgttcatgccgtggaacggttacaacttcgaagactcgatcctggtgaacgag
cgtgttgttcaggaagatcgcctgaccaccattcacatccaggaactggcttgtatctcc
cgtgacaccaagctgggtccggaagagatcactgctgacatcccgaacgtgggtgaagcc
gctctgtccaagctggacgagtccggtatcgtctacgtgggtgccgaagtgaagggtggc
gacattctggtcggtaaggtaacgccgaaaggtgaaacccagttgactccggaagagaag
ctgctgcgcgccatcttcggtgagaaggcgtccgatgtgaaggactcctccctgcgtgtg
ccgaacggtgtgtacggtaccgtggttgacgtgcaggtctttacccgcgatggcgtggaa
aaagacaagcgcgccaaagaaatcgaagagatgcagctgaaggaagcgaagaaggacttg
accgaagagttcaagatcctggaagacggcattttcggccgctcccgcaacctgctgctg
gccgccggttacagcgaagaccgtctgaacaagctcgatcgctccaagtggtttgaactg
gccatcgaagatgaagccaagcaaatcgagctggaacagatcgctgaacagcacgttgag
ctgaaggccgagttcgacaagaaattcgagaacaagcgtcgcaagatcatccagggcgat
gacctggcgccgggcgtactgaagatcgtcaaggtctatctggccgtcaagcgtcgcatc
cagccgggtgacaagatggcgggtcgtcacggtaacaagggtgttatctccaagatctgt
ccggtcgaggatatgccccatgacgagtacggccgtccggtcgacatcgttctgaacccg
ttgggcgtaccgtcccgtatgaacatcggtcagatcctcgaagtgcacttgggcctcgcg
gccaagggcatcggcgagaagatcgaccgcatggtcaaggaacagcgcgaactgcacgag
atgcgtgacttcctgcaacaggtctatgacctgggcgagaaagacacccagcaagtgaac
gtggccgagctgtccgacgacgacgtacgtaccctggttggtaacctgcgtaagggtctg
ccggtcgctacgccggtctttgatggcgccaaagagcgcgaaatcaaggccctgctgaag
ctggccgacctgccggagtccggtcagatcgccctgttcgacggtcgtaccggtaacgcc
ttcgagcgtaaggtcaccgtgggttacatgtacatgctgaagctgaaccacctggtagac
gacaagatgcacgcgcgttctaccggttcttacagcctggttacccagcagccgctgggt
ggtaaggcacagttcggtggtcagcgtttcggtgagatggaagtgtgggccctggaggct
tacggtgcggcatataccctgcaggagatgctgaccgtcaagtctgacgatgtgaacggc
cgtaccaagatgtacaagaacatcgtggatggcgaccaccgtatggagccgggcatgccc
gaatccttcaacgtattgctgaaggaaatccgctctctgggtatcaacatcgagctggac
gaagagtaa
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integrated database retrieval system
