Acholeplasma hippikon: NCTC10172_00939
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Entry
NCTC10172_00939 CDS
T06645
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ahk
Acholeplasma hippikon
Pathway
ahk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ahk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC10172_00939 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahk03021
]
NCTC10172_00939 (rpoB)
03400 DNA repair and recombination proteins [BR:
ahk03400
]
NCTC10172_00939 (rpoB)
Enzymes [BR:
ahk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC10172_00939 (rpoB)
Transcription machinery [BR:
ahk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC10172_00939 (rpoB)
DNA repair and recombination proteins [BR:
ahk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC10172_00939 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
DUF4962
Motif
Other DBs
NCBI-ProteinID:
VEU82913
UniProt:
A0A449BKI9
LinkDB
All DBs
Position
1:complement(960596..964408)
Genome browser
AA seq
1270 aa
AA seq
DB search
MGYKTDKYGKKVERRNYSKMLHNVELPNLIEIQTSSFDEFIKTGINELLVDISPIEGHNG
DLKLYFEESFLAEPKYSINDTKLRDLNYSRQLSARVKLENAVTGEVRESMVLMTDLPMMT
PSGTFVINGAERVVVSQIVRSSGVYYTSELDKKINDIKYSAQVIPTRGAWIEYEQGSKEI
LYAKLDRSKKVPLTTFIRALGFTTKKEIEETFGKNGLLTATFEKDEAKSPNDAVIELYSK
LRQGEKVPADAAREFIRLRLFDRRRYDLAAVGRYKFNKKLDVLSRVQGAYLVNDVMKDGE
VLVAKHTHLTKEVIELLKENRDAFRKEIISKENNLQNETAEEILATTLPDGGDMLYAKEN
IVNLRTGEVLVKRNEAITEEVINLLRRNRQSIDEKVIKYFLTSDVYAKEASRQGVIVEML
DIYTLDENNIKSNVIRVIGSDQRETREHIVLSDIVASISYYLNLYDKIGNVDDIDHLGNR
RLRLIGELLKNQFRIGLARAEKNIKDKMSTTNFNDATPANIINMTPLVGAIKTFFGSSQL
SQFMDQINPLAELTQKRRVSALGTGGIARDRAGVEVRDVHNSHYGRLCPIETPEGPSIGL
ISSLATYAKVDDYGFIKTPFLKVVKNEEGHPLVTDEVVYLTADQEGDEVIASAASPVNAD
GTFKENKVIARANGETTILDSQSVTYMDVSPKQLVSVASASIPFLEHDDASRALMGANMQ
RQAVPLLKPTSPIVGTGIEHKAAKDSGAVVVAHHAGYVTYVDAKKVIITREPKEDVKVGN
KVIYKVGGDFNYAIAKQLYDYKLAETDTYEFIQFFRSNQDTLVLQSPIVFQGEYVEAGDV
IGDGPSTEKGELALGRNVTVAFMTWEGYNYEDAVIMCEDLVKNDVYTSIHIDEYEIETRD
LKQSNGKEEITREIPNVGQEAVKYLDERGIIIPGSEVKEGDILVGKITPKGVFEPTPSEK
LIHAVIGDKAKEYRDSSLRVPHGGGGVVQSVQYFSKKNGDQLPAGVNEQIRVYIAKKRKI
TEGDKMAGRHGNKGVISKILPREDMPYMADGTYVDIMLNPLGVPSRMNIGQILEIHLGIS
AKKLGIKVATPVFDGVSDQDLKEIMAEAGIAPDGKTVLYDGRTGEPFQNRISVGVMYMIK
LSHMVDDKLHARNVGPYTLVTQQPMGGKAQNGGQRFGEMEVWALYAYGAANTLQEMLTVK
SDDMLGRNKVYYAITHGQEIPKASIPESFRVLTRELQALGLYVELVDAENGENEAIKSLV
DSSKTKGGLR
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgggatataaaaccgacaaatacggcaaaaaagtagagcgacgtaactattcaaaaatg
ttacacaatgtagaattaccaaaccttatcgaaatacaaacttcttcatttgatgaattt
attaaaacaggaatcaatgagttattagttgatatttctccgattgaaggacacaatggc
gatttaaagttatattttgaagaaagcttcttagctgagccaaaatattcaattaatgat
accaaattacgtgatttaaactattctagacagttatctgcaagagttaaattagaaaat
gcagtaactggtgaagttagagaatcaatggtcttaatgactgatctacctatgatgact
ccatcagggacttttgtcattaatggcgctgaacgtgttgttgtctcacaaatcgtaaga
tcatctggtgtttactacacatctgaacttgataaaaagattaacgacattaaatattct
gctcaagttattccaactcgtggtgcttggattgaatatgaacaaggatcaaaagaaatt
ctctatgcaaaacttgatagatctaagaaggttccattaacaactttcattagagcatta
ggtttcactactaagaaagaaattgaagaaacatttggtaagaatggtttattaactgct
acatttgaaaaagatgaagcaaaatcaccaaatgatgccgtaatcgaattatattctaaa
ttacgtcaaggcgaaaaagttcctgctgatgcagcacgcgaatttattcgtttaagatta
ttcgacagacgtcgttatgacttagcggcggttggtcgttataaatttaacaaaaaatta
gatgttttatcacgtgttcaaggtgcttatttagtaaacgacgttatgaaagatggcgaa
gtattagttgctaaacacacacacttaacaaaagaagttattgaattattaaaagaaaac
cgtgatgcatttagaaaagaaattatttctaaagaaaacaacttacaaaatgaaactgct
gaagaaatcttagcaactacattaccagatggcggcgatatgctttatgctaaagaaaat
atcgttaacttaagaactggtgaagttttagttaagagaaatgaagcaattactgaagaa
gttattaacttattaagaagaaacagacaatcaattgatgaaaaagttatcaaatatttc
ttaacatcagatgtttatgctaaagaagctagtcgacaaggtgttattgttgaaatgtta
gatatctatacattagatgaaaataacatcaaatcaaatgtaattagagtgattggttct
gaccaaagagaaacaagagaacatatcgtattatcagatattgttgcatctatctcatac
tatttaaacctttatgacaagattggtaatgttgatgacattgaccatttaggtaaccgt
cgtttacgtttaattggtgaattattaaagaaccaatttagaatcggtttagctagagcc
gaaaagaacattaaagataagatgtctacaactaactttaatgatgctacaccagcaaat
attatcaatatgactccattagtgggtgcgatcaaaacattctttggttcatcacaatta
tcacaattcatggatcaaattaacccacttgctgaattaactcaaaaacgtagagtttca
gctttaggtacaggtggtatcgctagagaccgtgccggtgttgaagtacgtgacgtccac
aactctcactacggtagattatgtccaattgaaacaccagaaggtccatcaattggttta
atctcatcacttgctacatatgctaaagtggatgactatggctttattaaaacgcctttc
ttaaaggttgttaaaaatgaagaagggcacccattggtaacagatgaagttgtatactta
actgctgaccaagaaggtgatgaagttattgcttcagcagcttctccagtgaatgctgat
ggtacattcaaagaaaataaagtaatcgctcgtgcgaacggtgaaacaacaatcttagat
tcacaatcagtaacttatatggacgtaagccctaaacaattagtgtcagttgcctctgcc
tcaattccattcttagaacacgatgacgcgtcacgtgccttaatgggagcgaacatgcaa
cgtcaagctgttccattattaaaaccaacttcaccaattgttggtacaggtattgaacac
aaggctgctaaagactctggtgcagttgttgttgctcatcatgctggttatgtaacatat
gttgatgctaagaaagttattattacaagagaaccaaaagaagatgttaaagttggtaac
aaagtaatttataaagttggtggcgactttaactatgcaatcgctaaacaattatatgat
tacaagttagctgaaactgatacatatgaattcatccaattctttagatcaaaccaagat
acattagttttacaatcaccaattgtattccaaggtgaatatgtagaagctggtgatgtt
attggtgatggtccatcaacagaaaaaggtgaattagcattaggtagaaacgtaacagtt
gccttcatgacttgggaaggttataactatgaagacgccgttattatgtgcgaagactta
gttaaaaatgacgtttatacttcaattcatattgatgaatacgaaattgaaactcgtgat
ttaaaacaatctaacggtaaagaagaaattacaagagaaattcctaacgttggacaagaa
gctgttaagtacttagatgaacgtggaatcattattcctggttcagaagtaaaagaaggc
gacattttagttggtaagattacacctaaaggtgtatttgaaccaacaccatcagaaaaa
ttaattcatgctgttatcggagataaagctaaagaatatagagactcatcattacgtgtt
ccacatggtggtggtggggttgtacaatcagtacaatactttagcaagaaaaatggtgat
caacttcctgctggtgtaaacgaacaaattagagtttacattgctaagaagagaaagatt
actgaaggagataagatggctggtcgtcacggtaataaaggggttatctctaagatctta
ccaagagaagacatgccatacatggctgatggtacatacgttgatatcatgttaaaccca
cttggggttccatcacgtatgaacattggacaaattttagaaattcacttaggtatttct
gctaaaaaattaggtatcaaggttgctacaccagtatttgatggtgtaagtgaccaagac
ttaaaagaaatcatggctgaagctggtatcgctccagacggtaagacagttctttatgat
ggacgtacaggtgaaccattccaaaacagaatttctgttggggtaatgtacatgattaaa
ttatcacacatggttgatgataagttacacgctagaaacgttggaccttacacattagtt
actcaacaaccaatgggtggtaaagcgcaaaacggtggacaaagatttggggaaatggaa
gtttgggcattatatgcttatggagctgccaatactcttcaagaaatgttaactgttaaa
tcagatgatatgctaggaagaaacaaagtctactatgcaatcactcacggtcaagaaatt
ccaaaagcctcaatcccagaatcatttagagtattaacaagagaactacaagctttaggt
ttatatgttgaacttgtcgatgctgaaaatggtgagaatgaagcaatcaagagtttagtt
gactcctctaaaactaagggagggcttagataa
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integrated database retrieval system
