Actinoalloteichus hymeniacidonis: TL08_03730
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Entry
TL08_03730 CDS
T04472
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahm
Actinoalloteichus hymeniacidonis
Pathway
ahm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TL08_03730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahm03400
]
TL08_03730
Enzymes [BR:
ahm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TL08_03730
DNA repair and recombination proteins [BR:
ahm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TL08_03730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
AAA_22
RecG_dom3_C
MFD_D3
UB2H
Motif
Other DBs
NCBI-ProteinID:
AOS61577
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All DBs
Position
759959..763618
Genome browser
AA seq
1219 aa
AA seq
DB search
MSAPLAGLLTALLGSKPFQDLVDAAGSAAVELGGPPALRPLVAAVLAAQQGADRPVLLVT
ATGREAEESTAVLGDLIGPDAVAELPSWETLPHERLSPRADTVGRRLAVLRRLAHPKESG
LGPLRVVVTTVRSLIQPLAPGLGEVAPVHLRVGEEHDFAEQAQRLANLAYSRVDMVEKRG
EFAVRGGILDVFPPTCEHPLRVEFWGDEVSEIRAFSVADQRSLPEPVAELLAPPCRELLI
TDSVRSKAEKLAEVHQADAQLAEMLAKIAEGIPVEGMEALIPALCEGELALLPDLLPRSA
HVLLADPEKIRGRAADLVRTGQEFLEASWMTAAGGGGAPIDLGASAYRSIEEVEDHTTAG
GRPWWTLTQLLSEPDADATSDADALQLDVRPVEAYRGEVERAFVDLRAHTAAGGAAIVVF
PGAGTASRAADQLRDAEVPVRLITDGLTEAPATGVVSVVRATMEDGFIAADPALVVLTEA
DLTGGRGGTSTRDMRRMPSRRRNAVDPLGLTPGDYVVHDKHGIGRYVEMSQRTVAGATRE
YLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNRLGGSDWAKTKTRAKKAVRE
IAAELVQLYAARQSAPGHAFGPDTPWQRELEDAFPYNETIDQLAAIDEVKGDMRRAVPMD
RVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFSERMRSFPVVVKGM
SRFTDKLEADEVINGLAAGDVDVVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIK
ALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGQYDGKQTAAAIR
RELLRDGQVFYVHNRVSSIEKAAKQLRELVPEAKVVTAHGQMNEDRLEKIIQGFWEREFD
VLVCTTIIETGLDISNANTLIVERGDMLGLAQLHQLRGRVGRARERGYAYFLYPAEKPLT
ETAHDRLATIAQNSELGSGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYIRLVGEAV
AAFRKQSGASEDGDAVEESTEVRIDLPVTAHIPHDYVPGERLRLEAYRKIASASGDSPLD
SRERVASDADALAAVRAELVDRYGPPPIEVDRLLAVSAFRQLCRRFGIAEVTLQGNLIRF
APMELRDSQLIRLERLYPKATYKPALRLVSVPRPTEGGAGGRLGAPPLRDEALLSWAEGF
LSAMAGVPAPAAASAGNRS
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgctccactcgccgggctgctcaccgcccttctgggcagcaagcccttccaagac
cttgtcgatgcggcgggttcggctgcggtcgagctcggcggtccgcccgccctgcggcca
ttggtcgccgcagtactggccgcgcagcagggtgccgaccggcctgtgttgttggtcacg
gccaccgggcgggaggccgaggagagcaccgccgtgctcggcgatctgatcgggcccgac
gccgtcgccgaactgccgtcctgggagaccctgccgcacgagcggctctcgccacgcgcc
gacacggtgggacgcaggctggcggtgttgcgcaggctggcccacccgaaggagagcggg
ctcgggccgcttcgagtcgtcgtgaccacggtccgcagcctgatccagccgttggcgccc
ggcctcggcgaggtcgcaccggtacacctgcgggtcggcgaggaacacgacttcgccgag
caggcacagcgcctcgcgaacctggcctacagccgggtcgacatggtggagaagcgcggc
gagttcgccgtccggggcggcatcctcgatgtcttccccccgacctgcgaacacccgttg
cgagtggagttctggggtgacgaggtctccgagatccgggccttctccgtcgccgatcaa
cgatcgttgccggagcccgtcgccgagctgctcgcgccgccctgtcgggaactgctgatc
acggactcggtgcggtccaaggccgagaagctcgccgaggtgcaccaggccgacgcacaa
ctcgccgagatgctggcgaagatcgccgagggtattccggtggagggcatggaagccctg
atcccggccctctgcgagggcgagctggcgttgctgcccgacctgcttccccggtcggcg
catgtgctgctcgccgacccggagaagatccgcggtcgggcggccgacctggtgcgtacc
ggtcaggagttcctggaggcgtcctggatgaccgccgcaggcggcggcggggcgccgatc
gacctcggtgcctcggcctaccggagcatcgaggaggtcgaggaccacaccacggcaggc
ggccgcccctggtggacgctgacccagctgctctccgagccggacgcggacgccacctcg
gacgccgacgcactgcaactcgacgtccgacccgtcgaggcgtatcgcggcgaggtggag
cgcgccttcgtcgacctgcgggcccacaccgccgccggtggggccgcgatcgtggtgttt
cccggcgcgggcacggcctcgcgggccgccgaccagttgcgggacgccgaggtgccggtg
cgactgatcaccgacggcctgaccgaggcgcctgccaccggcgtcgtcagcgtggtccgc
gcgacgatggaggacggtttcatcgccgccgacccggcgctggtggtgctgaccgaggcc
gacctgaccggcggtcggggcggcacctcgaccagggacatgcggcggatgccctctcgg
cggcgcaacgccgtcgatccactgggactcacccccggcgactacgtcgttcacgacaag
cacggcatcggccggtacgtggagatgtcccagcgcaccgtggcgggtgccacccgcgaa
tacctggtgctcgaatacgcctccagcaagcgcggccaaccgggtgaccggctgttcgtg
ccgaccgaccagctcgacgaggtctcccgatacgtgggcggcgaactgccgacgctcaac
cggctcggcggctccgactgggccaagaccaagaccagggccaagaaggccgtccgggag
atcgctgccgaactcgtgcagctctacgccgcgcgacagtcggcaccagggcacgccttc
ggcccggacaccccgtggcaacgggagctggaggacgcgttcccctacaacgagaccatc
gaccagctcgccgcgatcgacgaggtcaagggcgacatgcgtcgggcggtcccgatggac
cgggtcatctgcggcgacgtcggatacggcaagaccgagatcgccgtccgcgccgcgttc
aaggccgtccaagacggtaagcaggtcgtggtcctggtgccgacgaccttgctggcccag
cagcacctcaacaccttcagcgagcggatgcggtccttccccgtggtggtcaaggggatg
tcgcggttcaccgacaagctggaggccgacgaggtgatcaacggcctcgcggcaggcgat
gtcgacgtggtgatcggcacgcaccggctgttgcagaccggaatccgctacaaggatctc
ggcctggtgatcgtcgatgaggaacagcggttcggcgtcgagcacaaggaacacatcaag
gcgctgcggacccacgtcgacgtgctgaccatgtcggccacgccgattccgcgaacgctg
gagatgagcctggcgggcatccgggagatgtcgaccatcctcacgccgccggaggaacgg
cacccggtgctgacctatgtcggccagtacgacggcaagcagacggccgcggcgatccgc
cgggagctgctgcgcgacggccaggtcttctacgtgcacaatcgggtgtcctcgatcgag
aaggccgccaagcagctccgggaactcgtccccgaggccaaggtcgtcaccgcccacggc
cagatgaacgaggatcgcctggagaagatcatccagggtttctgggagcgggagttcgac
gtcctggtctgcacgaccatcatcgagaccgggctggacatctccaacgccaacaccctg
atcgtcgagcgcggcgacatgctgggtctggctcagctgcatcagctgcgcggtcgggtg
ggtcgagcgcgggaacgcggttacgcctacttcctctatccggcggagaaaccgctgacc
gagaccgcccacgaccggctcgccaccatcgcgcagaactcggaactgggctccggtatg
gcggtggcgatgaaggacctggagatccggggcgcgggcaacatcctcggcgcggagcag
tccgggcatatcgcaggcgtcggcttcgacctctacatccggctggtcggtgaggccgtc
gcggccttccggaagcagagcggcgcgtcggaggacggtgacgcggtcgaggagagcacc
gaggtgcgcatcgatctgccggtcaccgcacacatcccgcacgactacgtgccgggggag
cggttgcggctggaggcgtatcgcaagatcgcctcggcctcgggcgactcgcccctggac
tcccgcgagcgggtggcctcggatgccgatgcgctggcagcggtgcgcgcggaactcgtc
gaccgttacgggccaccgccgatcgaggtcgaccgattgcttgcggtgtcggccttccgg
cagctctgtcgccggttcggcatcgccgaggtgaccctgcagggcaatctgatccgcttc
gcgccgatggagcttcgggactcgcagctgatccgactcgaacggctgtacccgaaggcg
acctacaagcctgcgttgcgattggtctcggtgccccggcccaccgagggcggcgccggc
ggccggctgggggctccgccgctgcgggacgaggccctattgtcctgggcggaaggattt
ctgtcggcgatggccggggttccggcgccggctgccgcatccgcaggcaaccgttcgtga
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