Aeromonas hydrophila subsp. hydrophila AL09-71: V428_18150
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Entry
V428_18150 CDS
T03192
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ahr
Aeromonas hydrophila subsp. hydrophila AL09-71
Pathway
ahr03410
Base excision repair
ahr03430
Mismatch repair
ahr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ahr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
V428_18150
03430 Mismatch repair
V428_18150
03440 Homologous recombination
V428_18150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahr03400
]
V428_18150
DNA repair and recombination proteins [BR:
ahr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
V428_18150
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
V428_18150
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V428_18150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Motif
Other DBs
NCBI-ProteinID:
AHX33895
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Position
complement(3972552..3974282)
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AA seq
576 aa
AA seq
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MPLQIRRRPRVDDSHLPATLHPLLRQIFASRGVEDPALLERSASQLLPPQRLFGMAQAVP
LLAEALTAQKRILIVGDFDCDGATSSALCVLALRAMGGRHIDFLVPNRFEFGYGLTPEIV
ELAVARGAEFLITVDNGISSIAGVAAAKAAGMQVLVTDHHLPGQELPDADAIVNPNQHGC
DFPSKSLAGVGVAFYLMAALNTQLRQSGWYERQGLRAPNVADYLDLVALGTVADVVALDG
NNRILVHQGLQRIRAGRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSL
GVACLLSEDINLARQLASEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHR
DEWHQGVVGLVASKVKEKYYRPVIAFAESSETELKGSGRSIPGVHLRDALELLDTRHPGL
MGKFGGHAMAAGLTLPKANIEAFGRAFEAVISELVTPELLTGVLLTDGELLPDELSLELA
ELIRASGPWGQAFPEPLFDGEFVLVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLQRWP
DASVKRVRLVYRLDVNEWRGNRSVQLLVEHLEAAGL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgcaaatccgtcgtcgtccgcgagttgatgattcccatctgcccgccaccctg
cacccgctgcttcgtcaaatcttcgccagccgcggggtcgaagatcccgctctgctggag
cgcagcgccagccagctgctgccgcctcagcgtctgttcggcatggcgcaggcggtgccg
ctgctggccgaggcgctgacggcgcaaaaacgcattctcatcgtcggtgattttgactgc
gacggcgccaccagctcggccctgtgcgtgctggccctgcgcgccatgggcggtcgccac
atcgatttcctggtgcccaaccgcttcgagttcggttatggcctcaccccggagatcgtc
gagctggcggtggcccgtggcgccgagttcctgatcacggtggacaacggcatctccagc
atcgccggggtggcggcggccaaggcggccggcatgcaggtactggttaccgatcaccat
ttgccgggccaggagctgcctgacgccgatgcgatagtgaatcccaaccagcatggctgc
gactttccctccaagtcgctggccggggtcggggtcgccttctatctgatggcggccctc
aacacccagctgcgccagagcggctggtatgagcgccaggggttgcgcgcgcccaacgtg
gcggattatctcgatctggtggcgctcggcaccgtggccgacgtggtggcgctggatggc
aacaaccgcatcctggtccatcagggtttgcagcggatccgggccggccgttgccgtccc
ggcatccaggcgctggtggacgtgtcgggtcgtgacggtcgtcgcctgtgcgccgccgat
ctcggctttgcgctggggccgcgcctcaacgcggtgggccggctcgacgacatgtcgctc
ggggtcgcctgcctgctgagcgaggacatcaacctggcgcgccagctcgcctccgaaatg
gacagcctcaaccaggagcgcaaggaaatcgagcaggggatgcagcaggaggcgctcgcc
accctggagcagatccgttttcgtgacggcgaggtgccatccggcatagtgctgcaccgg
gacgagtggcatcagggggtggtggggctggtggcctccaaggtgaaagagaagtactac
cgcccggtcatcgcctttgccgagagcagcgagaccgagctcaagggctccgggcgctcc
atcccgggggtgcacctgcgcgatgcgctggaactgctcgacacccgccaccccggcttg
atgggcaagtttggcggccacgccatggcggctggactgaccctgcccaaggccaatatc
gaggccttcggccgggccttcgaggcggtgatcagtgagctggtgacgcctgagctgttg
accggggtgctgctcaccgatggcgagctgctgcccgatgaactgagtctggagctggcg
gagctgatccgcgcctccggcccctggggtcaggccttccccgagccgctgtttgacggc
gaattcgtgctggtgcagcagcggctggtgggggagaagcacctcaagatgatgctgacc
acggattccggccacgcggtggatgccatcgcctttggcgtcgacttgcagcgctggccc
gatgcctcggtgaagcgggtgcgactggtctatcggctcgacgtcaacgagtggcgcggc
aaccgcagcgtgcagctgctggtggagcatctggaggccgccggcctctga
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