Arachis ipaensis: 107619435
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Entry
107619435 CDS
T04301
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aip
Arachis ipaensis
Pathway
aip03020
RNA polymerase
aip03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107619435
09124 Replication and repair
03420 Nucleotide excision repair
107619435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107619435
03400 DNA repair and recombination proteins [BR:
aip03400
]
107619435
Enzymes [BR:
aip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107619435
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107619435
DNA repair and recombination proteins [BR:
aip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107619435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
107619435
NCBI-ProteinID:
XP_016177212
LinkDB
All DBs
Position
B09:complement(125638761..125645042)
Genome browser
AA seq
1457 aa
AA seq
DB search
MDIRFSFPYSPAETAKVRALRFQILSPDDIRRMSVVEIEHGIENPKVGGLSDPRLGTVHK
NIDCDTCGADMDHCPGHFGHLELAKPVFHVGLLNTVLAVMRCVCFNCSKILSGQNNKKFK
QALKITNPKSRLEMMVNACKNKSFCEGDDGDWEDPIRESHDGCGAQQPKLTIKGMKMIAE
YKVPRKKEILSAEKVLGILKGISDEDCQLLGLNTQYVRPEWMILQVLPIPPPSVRPSVMI
DASSRIEDDLTHQLARIIRSNKNLKTHESNGSPAHVISKFAQLLEFHIATYFDSALPGLQ
KAAKKSGRPIKSICSRHKEDDGQIRGMLGKRVDFSARTLITPDPNINIDEVGVPRSIALN
LTYPETVTPYNITRLKELVDYGPDPPPGKTGAKYIIRDDGQRLDLRYLEKSSDLHLEIGY
KVERHLEDGDLVLLNRRPSLHKMSIMGHKIKILPYSTFRLNMLVTKPYNVNFDGDEMDMH
VPQSFATRTEVLELMMVPKCIVSPQSNRPVMDIVQDTLLGCRKITKRDTFITKDVFMNIL
MWWEDFDGKVPAPAILKPEPLWTGKQVLNLIIPKQINLTGYSSWHDHMENGSSITPGDTV
VRIEKGELLTGTLCKETLGTFTGRLVHAIWVDVGPDASRKFLGHIQWLVNYWLLQNSFSI
GIGDTIADASTMEFFNRNISEAKKKVKYLIRDAQEQKLEAKPGSTMMDTHTLEKKVIDVL
IQAHEDAIEKVKMSLSESNNLKAMVTAGSKGSFINISQMTACLGQQNVEGKRIPFGFTDR
TLPHFVKDDYGTESRGFVENSYLHGLSPQDFFFHAMGSREGFIDNAVRVYETGYIQRRLV
KALEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQNLDSLKMKKSDFNRTFRYEFD
NENWNPSYMLEGPIEELKTSIELRTALEAEVLKLACDRCQLATEITCNSSLPLPVNLKRL
IRNAQKAFKIDFQKPSDMHPLEILEAVDRLQERLKVVPGNDLVSQEAQKNATLLFNILLR
STLASKRILQEYRLSREAFEWVVGEIESRFQQSLVTAGEMTGCVAAQSIGDLATKLTLET
FHYVGLGAKNVTLGVPRLREIIKTARRIQTPSLSVHLNPGSGVTSDNVKRVQCDLEHTTL
RRVTHTAEVWYDPEPMSTIIEEDVDFVKSHFETPDEEVAIEGISPWLLRIELDREMMVDK
KLSMADIAEKINLMFNGDLECIFNDDNAEKLVLRFRIMNNEAHPGEIQDGSADNVFLKII
GSNMLSEMTLRGIPGINKVFMKAIDVQKFNEEDGFQNHKEWMLETEGVNLLAAMCHEHVD
AARTTSNHLIEIIEVLGIEAVRRALLDELRAVMSFDGFYVNYRHLALLCDTMTYRGHLMA
ITRNGVDRNDAGPMMRFSFEETVNVLHDATIYAETDHLRGIRENNMLGLLAPFGTGQCAL
YPNEDMLKNSNELQLPS
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggatattaggttttcctttccttactctccggcggaaaccgcaaaggtccgagcgctt
cgcttccaaattctcagccccgacgatattaggcgaatgtctgtggttgaaatcgagcat
gggattgagaacccaaaggttggagggttaagcgacccgcgccttggaaccgttcataag
aacatcgattgtgacacgtgtggggctgatatggatcactgtccggggcatttcggtcac
ttggagctcgccaagccagtgtttcacgtcggtttattgaatactgtcctcgctgtaatg
cgttgcgtctgcttcaactgttccaaaattttatccggtcagaacaacaaaaagtttaag
caagctttgaagattacaaacccaaaaagtaggttggaaatgatggtgaatgcctgcaaa
aacaaaagcttttgtgaaggtgatgacggagattgggaggatcctattagagagagtcat
gatggctgtggtgctcagcagcccaagttaactattaagggtatgaagatgattgcggag
tataaagttccgaggaagaaagagattctttctgctgagaaggttcttggtattctaaag
gggataagtgatgaggactgccagttgctgggcttgaatactcagtatgtacgtcctgaa
tggatgattttgcaagttcttccaattcctcctccatccgtgagaccttctgttatgatc
gacgcatcctctaggattgaggatgacttaactcatcagttggccaggattatcaggtcc
aataagaatttgaagacacatgagagtaatggatcacctgcgcatgttatttctaagttt
gctcagttgttggagtttcacattgccacttattttgatagtgcgttgcctgggctccag
aaagctgctaaaaaatcaggaaggcctatcaaatcaatatgtagcaggcataaagaagat
gatggtcagattagaggaatgttggggaaaagagttgatttttctgctcgaacactaatt
acaccagaccccaacattaatattgatgaagtgggagtaccacggagtattgctttgaac
cttacatacccagagactgtaactccatataacatcacaaggttgaaagaacttgtagac
tatggacctgatcctccacctgggaaaactggtgccaaatacatcattcgtgatgatggg
caaaggcttgatctcagatatttggagaaaagtagtgatctccatttggagattggatac
aaggtagaacgtcatttagaggatggagatcttgtactcttgaatcgccgacccagtctt
cataaaatgtctatcatgggacacaaaatcaaaatcttgccttattctacgttcaggctt
aacatgttggtaactaagccatataatgttaattttgatggggatgaaatggatatgcat
gttcctcagtcatttgcaaccaggacagaggtgttggagctcatgatggtgcctaaatgc
attgtgtcacctcaatcaaataggccagtaatggatattgtccaagatacacttttagga
tgcagaaaaatcaccaagagagataccttcatcacgaaggatgtttttatgaacattctg
atgtggtgggaggattttgacgggaaagttcctgctccagcaatattgaagccagagcca
ttgtggactgggaaacaagttttgaatcttatcattcccaaacaaataaatttaactggg
tattctagctggcatgatcatatggaaaatggttcatcaataacccctggggatactgtg
gtccgaattgaaaaaggggaactacttactggaactctttgcaaagagacacttggaaca
tttactggacgtctcgttcatgccatttgggtagatgttggtcctgatgcatctcgtaaa
tttcttggtcatattcagtggcttgtaaactactggcttctgcagaattctttcagcatt
ggaattggtgatacaatagctgatgcgtcaactatggagttttttaataggaatatttca
gaggcaaagaagaaagtaaaatacttgatcagggatgctcaagaacagaagttggaagct
aaacctggatcgacaatgatggatacacatacactcgagaagaaagtgattgatgtgctg
atacaagctcatgaagatgccatagaaaaagtgaagatgagtttatctgagagcaataat
ctgaaagcaatggtgacagctggttccaaaggaagttttatcaatatatctcagatgact
gcttgtcttggtcaacagaatgttgagggcaagcgaattccatttgggtttacagatagg
acattgccgcattttgtaaaagacgattatgggactgaaagccgaggctttgtggagaac
tcatatctccatgggctaagcccgcaagatttctttttccatgccatgggaagtagggaa
ggatttattgataatgcagtgagggtatatgaaactggatacatccagaggcggcttgtg
aaggctttggaggatatcatggtcaaatatgatggaactgttaggaactctttaggagat
gtcatacaatttctctatggagaagatggtatggatgctgtttggattgaaacacagaat
cttgattccctgaaaatgaaaaagtcagacttcaataggacctttaggtatgagtttgat
aatgagaactggaatccgagttacatgcttgaagggcctattgaagaattgaaaaccagc
atagagcttcgtactgcacttgaagctgaagttttaaagcttgcgtgtgatagatgtcaa
cttgcaactgagattacttgtaacagttctctaccactgcctgttaaccttaagaggctt
atcaggaatgctcagaaggctttcaagattgactttcagaaaccttctgatatgcaccca
ctggaaattctagaagctgttgataggctgcaggagagactcaaggttgttcctggtaat
gatcttgtgagtcaagaagcacagaagaatgctactctcctattcaatatcctgttgcgc
agtactctagccagtaaaaggattctgcaggaatataggctttcccgtgaggcatttgag
tgggtagtgggagagatagaatcaaggttccagcagtcacttgtaactgctggggaaatg
actggttgtgtggcagcacaatcaattggtgaccttgctactaaattgactctcgaaaca
ttccattatgttggtttaggtgctaagaatgttacacttggcgttcccaggttaagggaa
atcattaaaacggctaggagaatccaaacgccttccttgtctgtgcatttgaaccctggg
tcaggtgtaacttcggacaatgttaagagagtgcagtgtgatttagagcatactactctt
aggagagtgacccacactgcagaggtgtggtacgatccagaaccaatgagtacgataatt
gaagaagatgttgattttgtgaagtcccactttgaaacgcctgatgaagaagttgctatt
gaaggaatctcaccttggttgcttcgcatagaactagaccgagagatgatggtggataag
aagttgagtatggctgacattgctgagaagatcaaccttatgtttaatggtgatttggaa
tgtattttcaatgatgacaatgctgaaaaacttgtacttcgtttccgaattatgaataat
gaagctcacccgggagagatacaggatggttctgctgacaatgttttcttaaagataata
ggaagcaacatgctgagtgaaatgaccttacgtggcatcccaggcatcaacaaggttttc
atgaaagccattgatgttcagaagtttaacgaagaagacggtttccagaatcataaggaa
tggatgcttgaaactgaaggtgtcaacctgttggctgcaatgtgccatgaacatgttgat
gcagcaaggactacaagcaaccacttaattgaaattattgaagtccttggaattgaggca
gttcgccgtgctctcctggatgaattgcgggctgtcatgtcttttgatggattttatgtc
aattacaggcatttggcgttgctgtgtgatacaatgacttatcgtgggcatttgatggca
attacacgcaatggtgtcgaccggaatgatgctggaccaatgatgagattctcatttgaa
gagacagtcaatgttctccatgatgctactatatatgctgaaactgatcacttgaggggt
atcagggaaaataacatgttaggcctgcttgcaccctttggcactggacaatgtgctctg
tatcccaatgaagatatgcttaagaattctaatgagctccagctacctagttaa
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integrated database retrieval system
