Arachis ipaensis: 107624816
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Entry
107624816 CDS
T04301
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aip
Arachis ipaensis
Pathway
aip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107624816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107624816
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107624816
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107624816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
SpoVIF
Motif
Other DBs
NCBI-GeneID:
107624816
NCBI-ProteinID:
XP_016182763
LinkDB
All DBs
Position
B02:9275827..9294171
Genome browser
AA seq
2409 aa
AA seq
DB search
MTAVESQPSLTAMAPTILSSAAPNQIRFLLTSLNEVNFDSVLHQLSQFAEFGTVGCILLL
QTCFDHFNYVRRDLKDVKYEPILGAVIKHLLDKPNFSTVFSESMKNIDINENFLANFCNG
LQLSLLEKITISLALSDSENPETRLSGKKFCMAQIEELHANPGSLSCHEQIHNIIMFLKQ
SEGLSKHVDSFMQILALVQFKDTPPFVLNPLLPDEMHEADFLRNMELFHDSVENDFDAIL
ADIQKEMNMGDIVKELGYGCTLDVSQCKEILSLFLPLTDSALSKLLGAIARTHAGLEDNQ
CTFLTFGAALGYNNLSELPLPNSWNIDVLIDTIKQLAPQTNWVRVIENLDHEGFFLPSEE
AFCFLMSVYRHACKEPFPLHAICGSVWKNTEGQLSFLKYAVSAPPEVFTFAHSTRLLAYN
DAINGLKLQNGHANHAWLCLDLLDVLCQLAEKGHASYVRLILDYPLKHCPEVLLLGMAHI
NTAYNLFQHEVSLVVFPMILKSAGGSGMIQHLWHANPNLVLRGVMDSQNNDLDSVTRIVD
ICQELKILSSVLEVIPSYYSIRLAAVASRKEFLDLEKWLSNNLSMYKDVFFEECLKFVKD
IHFGRSQSLSGKSFHQSGAVLNLYAETTPTFLKVLKSHTDFVNSSQLSEELERLQVSMID
SNPRLQNGAPADSSTSDAYSEDIEDEANLYFHKMFSDKLTINAMVQMLARFKESSVKREK
SIFDCMIGNLFEEYKFFPKYPERQLKIAAVLFGSVIKHHLVTHLSLGIALRYVLDSLRKP
ADSKMFTFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVTFIEQALARISAGHAD
VDGVNHASLISNHNSAQTMLGHVEHLNGSGVIQPGQQHISLQLQQRRDIPLDDRHKASVG
SSTDVKPILSSVGQSSAVTPADTSSSNKLHSTGSASSMLSSPGFVRPSRGATSTRFGSAL
NIETLVAAAEKRETPIEAPGSEVQDKISFIINNISTANIEAKAKEFTEILKEQYYPWFAQ
YMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLL
KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQP
PNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLSVDMKDVTPTSLLKDRKREIEGNP
DFSNKDVGASQAQMMSDIKSSLIQPVNQVELPLEVTNPSNTGAHPHLLSQYASPLHISTG
ALMEDEKVTPLGLSDQLPSAQGLLQATPTPVPFSLSQLPSQIPNIATHLIINQKLSGFGL
QMHFQRAVPIAMERAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIVNAAHLMV
ASLAGSLAHVTCKEPLRASISSQLRISLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQA
ATDKAITTIDTEINQQLSMRRKHREGMGSTFFDTNLYTQSSMGVVPEPLRPKPGQLSLSQ
QRVYEDFVRLPWQNQSSQSSHSMSSGLSVQSGNAGLAGTNGAVSGQINPGYSVSSSYEGG
VSRPVEDMSESNLAQHFSASSIHIRAADSVSQHSLEKESVASFPSTASTPELHTVDTSDS
MKESGASQPLASVVERIGSSFLEPTISTREALDKYQMVAQKLEALVNNDAKEAEIQGVIS
EVPEIILRCVSRDEAALAVAQKVFKGLYDNVSNNTHVGAHLAILTAIRDVCKLAVKELTS
WVIYSEEERKFNKDITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQMLVVE
ELKVISELHNLVDALAKLASKPGSPESLQQLIEMIKNPSVSVPAKEDKARQSRDNKGPGM
LAPNREEVNIVESVEPDPAGFREQVSMLFTEWYRICELPPPNDTASTHFILQLHQNGLLK
GDDVTDRFFRLLMELVVTHCLNSEVINSGALQSSQQLPAMSFIAIDIYAKLVFSILKGSN
KSFLLSKILAVTIRLILKDAEEKKASFNPRPYFRLFINLLLDLGSLEPVTDGANLQILIA
FANTFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFL
RHAELGDPVRFLYKGTLRVLLVLLHDFPEFLCDFHFTFCDVIPPSCIQMRNIVLSAFPRS
MRLPDPSTPNLKIDLLQEITQSPRILSEVDAAIKAKQIKADVDEYLKTRQQNSPFLSELK
DKMLLSPNEAASAGTRYNVPLINSLVLHVGMQAIQQLQGRSPHAQSASPGFPLAVFSVGA
ALDIFQTLIVDLDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITR
VLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPV
DESMVSGWV
NT seq
7230 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgtcgaatcccaaccctccctcaccgccatggcccccaccatcctctcctcc
gcagctcccaaccagattcgcttcttgctcacctccttgaacgaagtcaactttgactcc
gttctccatcaactctctcagtttgctgagtttggaaccgttggatgcattttgctgctt
cagacatgctttgatcactttaattatgtcaggagagatttgaaagatgtgaagtatgag
ccaattcttggggcagtcataaagcacctcctggacaaaccaaactttagcacggtgttt
tcggagtcaatgaagaatatagacatcaacgaaaacttcctagcaaatttttgtaatgga
ctacagttgtctttactggaaaaaattaccatcagtcttgcattatctgattctgaaaat
cctgaaaccaggttatctggcaagaaattttgcatggctcagattgaggaattgcatgcc
aatcctggttctttgagttgccatgaacaaattcacaatattatcatgttcctcaagcaa
tcagagggtctctccaagcatgtagattcctttatgcagatattagcattggtgcagttc
aaggacaccccaccttttgttctgaatccgctgctacccgatgagatgcacgaggctgat
tttttgaggaatatggagttgttccatgattctgtagaaaatgattttgatgctattttg
gcagacatacagaaggaaatgaacatgggagatattgtgaaggaactaggctatgggtgc
acacttgacgtctctcagtgcaaggagatcttgtcacttttcttacctttaaccgacagt
gccctctctaaattacttggtgctattgctcgtacccatgcagggctggaggacaaccag
tgtacattcttaacttttggtgcagcccttggatacaataacttgtctgagttgccactg
ccgaactcttggaacattgatgtgttgatagatacaatcaagcagcttgcacctcaaacc
aactgggtacgggttattgaaaatcttgatcatgaaggatttttccttcctagtgaagaa
gcattctgttttctgatgtctgtgtatagacatgcctgtaaggagccgtttcctctccat
gccatctgtggatctgtgtggaagaatactgagggtcagctatctttcctaaaatatgct
gtatcagcaccaccggaagtgtttaccttcgcgcactctacaaggctgctggcatataat
gatgcgattaatggcctcaagcttcaaaatggacatgctaatcatgcatggctgtgtctt
gaccttctggatgttctctgccagctagctgagaagggtcatgccagttatgttcggttg
atacttgattatcccctgaaacactgtcctgaagtcttgcttctagggatggcacacatt
aatactgcttacaacctcttccaacatgaagtatctctagttgttttccccatgatacta
aagagtgctggaggtagtggaatgattcaacatctatggcatgctaatcctaatctggtc
ttacgaggggttatggattcccaaaacaatgacctggacagtgttacaagaattgttgac
atctgccaggagctaaagattctatcatcagtactggaagtcattccctcctattatagt
ataagattagcagctgttgcttcaagaaaagaattccttgaccttgagaagtggctgagt
aacaacttatctatgtacaaggatgtcttctttgaggagtgcctcaaatttgtaaaagat
atccattttggtagatcacagagcttatctggtaaatcttttcatcagtctggtgctgtt
ctgaatctttatgctgagactactcctaccttcttgaaggttctgaaatctcatactgac
tttgttaactctagtcaactttctgaggagctggagaggttgcaggtatctatgatagat
tcaaacccaagactgcaaaatggtgcgcctgcagattcgtctacctctgatgcatattcg
gaggacattgaagatgaagcaaacttgtacttccataagatgttttctgataagttaacc
atcaatgcaatggtgcaaatgcttgcccggttcaaggaatcttctgtgaagagggagaaa
tcaatttttgattgcatgattggaaacttgtttgaggagtataaattttttccgaaatat
cctgaaaggcaactcaaaattgctgcagttctctttggttccgtcataaagcatcacctt
gtgactcatctgtctctggggattgctcttcgatatgttcttgattcgttacgcaagcct
gcagattcaaagatgtttacgtttggaagtctggccttggagcagtttgtggaccgcctt
attgagtggcctcagtattgcaatcacattctgcaaatttcccatttgcgcagcacacat
tcagaaatcgtcactttcattgaacaggctcttgccaggatttctgctggtcatgcagat
gtggacggggtgaaccatgcttcacttattagtaaccataattctgcacaaactatgtta
gggcatgtggagcatctcaatggctctggtgtcatccagcctgggcagcaacatatatca
ctgcagcttcaacagaggcgtgatattcccttggatgatcgtcataaagcctctgttggt
tcatccactgatgtaaaaccgatcttatcatctgtagggcaatcttcagcagttactcct
gctgatacttctagtagtaataagctacatagcactggcagcgcatcgtcgatgttatct
tctcctggttttgttcgtccttcgcgaggagctacttcaaccaggtttggatcagccttg
aacattgaaactttggttgcagctgctgagaaaagagaaactcccatcgaggctccaggg
tcagaggttcaggataagatatcatttataattaataatatatctactgcaaatattgaa
gctaaagcaaaagaattcactgaaattttgaaagagcagtactatccatggtttgcacag
tatatggttatgaaaagagcgagcattgagccaaatttccatgacttgtacctgaaattc
ctagataaagtcaattcaaaggctttgaacaaagagattgtgcaggcaacctatgaaaat
tgcaaggttcttttaggatctgagctcataaagtctagttcagaagaacgctctttgctt
aaaaatctgggaagctggcttggaaagttaacaattgggcggaatcaggttttgagggct
cgtgaaatagacccgaaatctttgattatagaggcatatgagaaggggctgatgatagct
gttatcccatttacttcaaaggtccttgaaccatgccaaagcagtcttgcatatcaaccc
cctaatccttggacgatgggcattctgggattgcttgctgagatttattcaatgccaaac
ttgaaaatgaacctcaaatttgacatagaggtgttgttcaaaaatcttagtgtggatatg
aaggatgttacgccaacttctctcctgaaggatcggaaaagagaaattgaaggaaatcct
gatttctccaataaagatgttggggcgtctcaagcacaaatgatgtctgatataaaatct
agccttatacagccagtaaatcaagtggagttaccacttgaagttaccaatccatctaat
actggggcacatcctcatttactctctcagtacgctagtccacttcatatttccactgga
gccttgatggaggatgaaaaggtaacacctctaggcttgtctgatcaacttccttctgct
caaggactattacaagcaactcctacgcctgtacctttttcccttagccagcttccatca
cagatacctaatattgcaactcatcttattatcaatcagaagcttagtggttttgggttg
caaatgcattttcagagggctgtacctattgcaatggagagagctatcaaagagatagta
tctagtattgtgcagcgtagtgtttccatagctacacaaacaacaaaggagcttgtttta
aaggattatgccatggaatcagatgagacacgcatagtaaatgctgcacacctgatggtt
gccagtctggctgggagcttagctcatgttacatgcaaagaacctttaagggcatcaata
tcaagtcaactaagaatttcacttcagaatttaaatattgcaaatgaaattttggagcaa
gctgtgcaacttgtcaccaatgataatcttgatcttggttgtgcagtcattgagcaggct
gctactgataaggcaataaccaccattgatacagaaattaatcaacaactttctatgaga
aggaagcatcgagaaggtatgggttccacattttttgatacaaacttgtacacacaaagt
tctatgggtgttgtgccagagcctcttcgacccaagcctggtcagttgtccctctcgcag
cagcgcgtctatgaggacttcgttcggcttccctggcaaaatcagtcaagtcagagctca
cattctatgtcatctggtctttcggttcaatctggaaatgctggtctcgctggcactaat
ggtgctgtatcaggacaaattaaccctggttactctgtaagctccagctatgaaggaggg
gtgtcgcgaccagtagaagatatgtcggaatctaatttggctcaacacttcagtgcttcc
tcaattcacattagagctgctgacagtgtttcccagcacagtttggagaaagaatcagtt
gcctcatttccttcaactgcttccacacctgagttgcacactgttgatacttctgattct
atgaaagaatctggagcttcacagccactagcaagtgtcgtagagcgcattggaagtagt
ttcttggagcccactatttctacaagggaagccttggataaataccaaatggttgcacaa
aagttggaggctttggttaataatgatgccaaggaagcagaaatacagggggtcatatcc
gaggttcctgagatcatactcagatgtgttagtcgagatgaggcagctttagctgtagct
cagaaggtattcaagggcctttatgacaatgtatccaacaacactcatgttggtgctcat
cttgcaatcctgactgccattcgcgatgtttgcaagcttgccgttaaggagcttaccagc
tgggtaatttactcagaagaagaaaggaaattcaacaaagatattactgtaggcctgatc
cgcagtgaactgctaaatcttaccgagtacaatgttcatatggcaaagctcattgatggg
gggagaaacaaggctgctacggagttttctatttctcttcttcaaatgctggttgttgag
gaactgaaagttatttcagaacttcacaatcttgttgatgctttggcaaagcttgcttca
aagcctggatcccctgaatcgttgcaacagctgattgagatgatcaagaacccttctgtt
agtgttcctgcaaaggaggataaggcaagacaatcaagggacaataagggtcctgggatg
ctggcaccaaaccgggaagaagtaaacattgtagagtctgttgaaccagatcctgctgga
ttccgtgagcaggtttccatgttgtttacagaatggtatcggatatgtgaactccctcct
ccgaatgatacagcttctactcacttcatcttacaattacatcaaaatggtctccttaag
ggggatgatgtaacagatcgcttcttccggctattgatggaactagttgttacacactgc
ttaaacagtgaggtgattaattctggggcattgcaatcttctcaacagctgccagcaatg
tcatttattgcgattgatatttatgccaagcttgtcttctcaatattgaagggatcaaac
aagtcctttcttctttctaagattcttgcggtgactattcggttgattctaaaagatgca
gaagagaagaaggcctcttttaatccaagaccgtatttcagattgttcattaatttgctt
ctagatcttggttcacttgaacctgttactgatggtgcaaatctccagattttgattgct
tttgccaatacttttcatgctttgcagcccctcaaggttcctgctttcagttttgcttgg
cttgagttgataagtcacaggagctttatgccaaaaatgctgactggtaatggtcaaaaa
ggttggccttatatccaaaggttgcttgttgatctcttccaatttatggagccttttctg
agacatgctgaactcggagatccggtccgttttctctataaaggcactcttagggtgcta
ctggtgctacttcatgacttccctgagttcctatgtgactttcactttaccttctgtgat
gttattccgccaagttgcatacagatgcggaatattgttctgagtgcttttccgcggagt
atgaggttgccagatccatccacccccaatttgaagattgatttgcttcaagaaattact
caatccccaaggattctttcggaggtcgatgctgctattaaagcgaagcagattaaggct
gatgtggatgaataccttaagacaagacagcaaaattctccatttttgtctgagctgaag
gacaagatgctcctttcacctaatgaagctgcttctgccgggacacgttacaatgtgcca
ttgatcaactcacttgtgttgcatgttggaatgcaggcaatccaacaacttcagggacga
tctccccatgctcaatctgcatcacctggtttccccttggctgtattttctgttggtgct
gcattggatattttccagacactaattgtggacttggacactgaagggcgctatcttttc
ttaaatgccgttgccaaccaactacgctaccctaacacacacacccactacttttccttc
atccttctgtacttgtttgcggaatcaaaccaggaaatcatccaagaacaaattactaga
gtattgttagaacggctaatcgttaatcgtcctcatccttggggactgctcatcactttc
attgagctgatcaagaacccgaggtataatttctggaaccggtctttcataagatgcgca
ccagagattgagaaactttttgagtccgtctctagatcctgcggcggtccaaaaccagtg
gatgagagtatggtctccggttgggtttaa
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integrated database retrieval system
